TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
         (499 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic ...   157   1e-36
gb|JH378306.1| Saimiri boliviensis boliviensis unplaced genomic ...   136   3e-30
gb|JH378269.1| Saimiri boliviensis boliviensis unplaced genomic ...    91   2e-16
gb|JH378201.1| Saimiri boliviensis boliviensis unplaced genomic ...    51   2e-04

>gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035,
                whole genome shotgun sequence
          Length = 19873202

 Score =  157 bits (397), Expect = 1e-36
 Identities = 76/78 (97%), Positives = 78/78 (100%)
 Frame = +3

Query: 179      SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE 238
                +SDDLFSLPYCPGKTL+VGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE
Sbjct: 10539048 TSDDLFSLPYCPGKTLIVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE 10539227

Query: 239      HMEEHGIKFIRQFVPIKV 256
                HMEEHGIKFIRQFVPIKV
Sbjct: 10539228 HMEEHGIKFIRQFVPIKV 10539281



 Score =  108 bits (269), Expect = 9e-22
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +1

Query: 93       TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK 141
                TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK
Sbjct: 10535935 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK 10536081



 Score =  103 bits (256), Expect = 3e-20
 Identities = 52/55 (94%), Positives = 53/55 (96%)
 Frame = +2

Query: 310      NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK 364
                N +TGKIPVTDEEQTNVPYIYAIGDILE KVELTPVAIQAGRLLAQRLYAGSTVK
Sbjct: 10544699 NCRTGKIPVTDEEQTNVPYIYAIGDILEGKVELTPVAIQAGRLLAQRLYAGSTVK 10544863



 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 46/46 (100%), Positives = 46/46 (100%)
 Frame = +1

Query: 433      ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478
                ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV
Sbjct: 10551961 ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 10552098



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +2

Query: 54       GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET 93
                GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET
Sbjct: 10532837 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET 10532956



 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +1

Query: 142      ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS 179
                ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS
Sbjct: 10536481 ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS 10536594



 Score = 81.6 bits (200), Expect = 9e-14
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +3

Query: 364      KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 401
                +CDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV
Sbjct: 10545387 QCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 10545500



 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +3

Query: 401      VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN 432
                VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN
Sbjct: 10547622 VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN 10547717



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +1

Query: 255      KVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTV 287
                +VEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTV
Sbjct: 10542340 QVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTV 10542438



 Score = 53.1 bits (126), Expect = 4e-05
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +3

Query: 287      VMLAIGRDACTRKIGLETVGVKINEK 312
                V+LAIGRDACTRKIGLETVGVKINEK
Sbjct: 10543947 VLLAIGRDACTRKIGLETVGVKINEK 10544024


>gb|JH378306.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00202,
               whole genome shotgun sequence
          Length = 1663455

 Score =  136 bits (342), Expect = 3e-30
 Identities = 62/77 (80%), Positives = 72/77 (93%)
 Frame = +3

Query: 180     SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 239
               SDDLFSLPYCPGKTLVVGASYVALECAGFLAG GLDVTVMVRSILLRGFDQ+MA K+G +
Sbjct: 1065012 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY 1065191

Query: 240     MEEHGIKFIRQFVPIKV 256
               ME+HG++F+ +F+P+ V
Sbjct: 1065192 MEQHGVRFLWKFIPVMV 1065242



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +3

Query: 421     CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478
               C+  ++      +RV+GFH+LGPNAGEVTQGFAAA+KCGLTK+ LD TIGIHP C EV
Sbjct: 1088427 CFVSVL-----KDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 1088585



 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 36/56 (64%), Positives = 46/56 (82%)
 Frame = +1

Query: 312     KTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 367
               ++GKIPV D EQTNVPY+YA+GDILE K ELTPVA+Q+G+LLA+RL+  S  K  +
Sbjct: 1075018 RSGKIPVNDVEQTNVPYVYAVGDILEGKPELTPVAVQSGKLLARRLFGASLEKVSF 1075185



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +3

Query: 54      GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 92
               GLGGTCVNVGCIPKKLMHQAALLGQAL DSR +GW+  +
Sbjct: 1056870 GLGGTCVNVGCIPKKLMHQAALLGQALHDSRKFGWEYNQ 1056986



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +3

Query: 94      VKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK 141
               VKH+W+ M +A+QNHI SLN+GY ++LREK V Y N+YG+F+  H+IK
Sbjct: 1060041 VKHNWETMTKAIQNHIRSLNFGYGLSLREKAVAYVNSYGEFVEHHKIK 1060184



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +3

Query: 364     KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 401
               +CDY NVPTTVFTPLEYG CGLSEEKA+E + +EN+EV
Sbjct: 1081149 QCDYINVPTTVFTPLEYGCCGLSEEKAIEIYKKENLEV 1081262



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +1

Query: 141     KATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS 179
               KATN  G+E  Y+A +F+IATGERPRYLGI GDKEYCI+
Sbjct: 1064107 KATNKNGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 1064223



 Score = 58.5 bits (140), Expect = 8e-07
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +2

Query: 400     EVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN 432
               ++YH+ FWPLEWT+  R+NN CYAKIICN  D+
Sbjct: 1085723 QIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 1085821



 Score = 49.3 bits (116), Expect = 5e-04
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +2

Query: 287     VMLAIGRDACTRKIGLETVGVKINEK 312
               V+LAIGRD+CTRKIGLE +GVKINEK
Sbjct: 1074401 VLLAIGRDSCTRKIGLEKIGVKINEK 1074478


>gb|JH378269.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00165,
               whole genome shotgun sequence
          Length = 3501582

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 39/54 (72%), Positives = 46/54 (85%)
 Frame = -1

Query: 45      TPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDW 98
               +P P GTRWGLGGTCVNVGCIPKKLMHQAALLG  ++D+ +YGW+V + V HDW
Sbjct: 2244534 SPVP-GTRWGLGGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHDW 2244376



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = -3

Query: 195     VVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQ 230
               + GA+ VALECAGFL G+GLD TVM+RSI LRGFDQ
Sbjct: 2224786 LAGAADVALECAGFLTGLGLDTTVMMRSIPLRGFDQ 2224679



 Score = 51.6 bits (122), Expect = 1e-04
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = -1

Query: 370     VPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 401
               VPTTVFTPLEYG  GLSEE+AV + G+E +EV
Sbjct: 2208189 VPTTVFTPLEYGCVGLSEEEAVARHGQERVEV 2208094


>gb|JH378201.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00097,
              whole genome shotgun sequence
          Length = 8594300

 Score = 50.8 bits (120), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = -1

Query: 432    NERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
              + +VVG H+ G    E+ QGFA A+K G TK   D+T+ IHP  +E   TL
Sbjct: 555965 SSQVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 555813


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,457,023,631
Number of Sequences: 2685
Number of extensions: 21922703
Number of successful extensions: 78205
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 73349
Number of HSP's gapped (non-prelim): 21029
length of query: 499
length of database: 869,524,021
effective HSP length: 135
effective length of query: 364
effective length of database: 869,161,546
effective search space: 316374802744
effective search space used: 316374802744
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)