TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo
sapiens # Complete
         (346 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378281.1| Saimiri boliviensis boliviensis unplaced genomic ...   123   2e-26

>gb|JH378281.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00177,
               whole genome shotgun sequence
          Length = 3145756

 Score =  123 bits (308), Expect = 2e-26
 Identities = 75/139 (53%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
 Frame = -3

Query: 133     GIRAALPVLDSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SLKLIPSVSSEAGPAPG 190
               GIRA LP LDSY                               SLKL+PSVS E GPAP 
Sbjct: 1023044 GIRAMLPFLDSYPASALPWDPLPEPAPEPPVSVSSEEDPEPAPSLKLVPSVSGETGPAPE 1022865

Query: 191     PLPTRTPLAANSPGPTLDFTFRADPSAIGLADXXXXXXXXXXXLGTIPSAISLQNCTETF 250
               PLP RTPLA N PGPTLDF  +ADPSA GLAD            GTIPSA SL N  E+F
Sbjct: 1022864 PLPARTPLATNPPGPTLDF--KADPSATGLADHTIPGSVPAPIPGTIPSAASLPNSAESF 1022691

Query: 251     PSSSENFALDKRVLIRVTY 269
                S+SENFALDKRV IRVTY
Sbjct: 1022690 VSASENFALDKRVPIRVTY 1022634



 Score = 73.9 bits (180), Expect(2) = 7e-16
 Identities = 44/81 (54%), Positives = 49/81 (60%), Gaps = 31/81 (38%)
 Frame = -2

Query: 297     EEDRAAQATGEFEVFVNGRLVHSKK-------------------------------RGDG 325
               EEDRAAQATG+FEVFV+GRLVHSKK                               RGDG
Sbjct: 1020477 EEDRAAQATGDFEVFVDGRLVHSKKVILGEGPGQGGGVVLRSWG*KTCVLSPLFAQRGDG 1020298

Query: 326     FVNESRLQKIVSVIDEEIKKR 346
               FV+E++LQKIVSVIDE IKKR
Sbjct: 1020297 FVDEAKLQKIVSVIDEVIKKR 1020235



 Score = 34.3 bits (77), Expect(2) = 7e-16
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -1

Query: 278     RYILLKKSLEQQFPNHLLF 296
               +YILLKKSLEQ+FP+ LLF
Sbjct: 1020619 QYILLKKSLEQRFPDRLLF 1020563


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,654,135
Number of Sequences: 2685
Number of extensions: 6049938
Number of successful extensions: 52591
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 43169
Number of HSP's gapped (non-prelim): 24657
length of query: 346
length of database: 869,524,021
effective HSP length: 131
effective length of query: 215
effective length of database: 869,172,286
effective search space: 186872041490
effective search space used: 186872041490
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)