TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo
sapiens # Complete
         (226 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic ...   350   4e-95
gb|JH378243.1| Saimiri boliviensis boliviensis unplaced genomic ...   199   6e-50
gb|JH378203.1| Saimiri boliviensis boliviensis unplaced genomic ...    98   3e-19

>gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00152,
               whole genome shotgun sequence
          Length = 4076947

 Score =  350 bits (897), Expect = 4e-95
 Identities = 177/220 (80%), Positives = 184/220 (83%)
 Frame = -1

Query: 7       VTRQVSGAAALVPAPSGPDSGQXXXXXXXXXXXXXXRGQRVPFGALXXXXXXXXXXXXXX 66
               VTRQVSG AA V APS P+ GQ              R Q+VPFGAL              
Sbjct: 2329663 VTRQVSGGAARVLAPSDPERGQSLAAAVAELPVLDARRQQVPFGALFRERRTVVVFMRHF 2329484

Query: 67      LCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIY 126
               LCYICK+YVEDLA+IP+SFLQEA+VTLIVIGQSSYHHIE FCKLTGYSHEIYVDPEREIY
Sbjct: 2329483 LCYICKKYVEDLARIPKSFLQEADVTLIVIGQSSYHHIESFCKLTGYSHEIYVDPEREIY 2329304

Query: 127     KRLGMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGN 186
               KRLGMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAVTGPLF+FQGDPAQQGGTLILGPGN
Sbjct: 2329303 KRLGMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAVTGPLFNFQGDPAQQGGTLILGPGN 2329124

Query: 187     NIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV 226
               NIHFI RDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV
Sbjct: 2329123 NIHFIDRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV 2329004


>gb|JH378243.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00139,
               whole genome shotgun sequence
          Length = 4829858

 Score =  199 bits (507), Expect = 6e-50
 Identities = 111/162 (68%), Positives = 122/162 (75%), Gaps = 2/162 (1%)
 Frame = +3

Query: 67      LCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCKLTG-YSHEIYVDPEREI 125
               LCYICKEYVEDLAKIP+SFLQ+ANVTL+VIGQ SYHHIEPF +    +S       E  +
Sbjct: 2821761 LCYICKEYVEDLAKIPKSFLQKANVTLMVIGQPSYHHIEPFLQTDWIFS*NACRS*EGNL 2821940

Query: 126     YKRLGMKRGEEIASSGQSPH-IKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGP 184
               YK    KR E      +SPH  KS L S  LQ+L  AVTG LFDFQGDP QQ GT+ILGP
Sbjct: 2821941 YKIGNEKR*ENCFLRTESPHKFKSTLRS--LQNL**AVTGFLFDFQGDPFQQSGTIILGP 2822114

Query: 185     GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV 226
                NNIHFI  DRNRLDHKPINSVLQLVGVQH+NFTNRPSVIH+
Sbjct: 2822115 CNNIHFIRCDRNRLDHKPINSVLQLVGVQHLNFTNRPSVIHI 2822240


>gb|JH378203.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00099,
               whole genome shotgun sequence
          Length = 8192610

 Score = 97.8 bits (242), Expect = 3e-19
 Identities = 45/48 (93%), Positives = 47/48 (97%)
 Frame = -3

Query: 140     SGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGNN 187
               SGQSPH+KSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPG +
Sbjct: 2196628 SGQSPHVKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGEH 2196485



 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -3

Query: 185     GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV 226
               GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV
Sbjct: 2193040 GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV 2192915



 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 37/58 (63%), Positives = 47/58 (81%)
 Frame = -2

Query: 91      VTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHIKS 148
               ++ +V+   +    + FCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSG++ H+ +
Sbjct: 2200766 LSFVVVKIPAVLSFQSFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGKT*HVSN 2200593


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 637,636,376
Number of Sequences: 2685
Number of extensions: 8901628
Number of successful extensions: 35797
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 32469
Number of HSP's gapped (non-prelim): 13358
length of query: 226
length of database: 869,524,021
effective HSP length: 126
effective length of query: 100
effective length of database: 869,185,711
effective search space: 86918571100
effective search space used: 86918571100
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)