TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378117.1| Saimiri boliviensis boliviensis unplaced genomic ...    94   3e-18

>gb|JH378117.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00013,
                whole genome shotgun sequence
          Length = 39031659

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 55/96 (57%), Positives = 60/96 (62%), Gaps = 10/96 (10%)
 Frame = -3

Query: 83       RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV----------YACMMV 132
                RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV            C   
Sbjct: 24619771 RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVCNLIALVTRFLGCQ*S 24619592

Query: 133      FFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLP 168
                  +  +I N C       +    VPV S  +S +LP
Sbjct: 24619591 ILMDFLILNTCY*FTC*HVLY*FVPVLSLGKSLNLP 24619484



 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 44/63 (69%), Positives = 47/63 (74%), Gaps = 5/63 (7%)
 Frame = -2

Query: 43       FQICVSXGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR-----HIASFLSVFKLVLI 97
                F   VS GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR         F+ +FK + I
Sbjct: 24620432 FFCSVS*GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR*EILIT*KEFI*LFKCL*I 24620253

Query: 98       GLI 100
                GLI
Sbjct: 24620252 GLI 24620244



 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 38/45 (84%), Positives = 39/45 (86%)
 Frame = -1

Query: 1        MRXXXXXXVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI 45
                MR      VAASA+VRSEASANLGGVPSKRLKMQYATGPLLKFQI
Sbjct: 24635796 MRLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQI 24635662



 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -1

Query: 126      VYACMMVFFLSNMIENQCMSTGAFEITLN 154
                VYACMMVFFLSNMIENQCMSTGAFEITLN
Sbjct: 24617466 VYACMMVFFLSNMIENQCMSTGAFEITLN 24617380


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.325    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,195,493
Number of Sequences: 2685
Number of extensions: 8420914
Number of successful extensions: 50385
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 42838
Number of HSP's gapped (non-prelim): 26522
length of query: 195
length of database: 869,524,021
effective HSP length: 124
effective length of query: 71
effective length of database: 869,191,081
effective search space: 61712566751
effective search space used: 61712566751
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)