TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000024_1.0 # Protein # Selenoprotein S (SelS) # Homo
sapiens # Complete
         (189 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378234.1| Saimiri boliviensis boliviensis unplaced genomic ...    59   1e-12

>gb|JH378234.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00130,
               whole genome shotgun sequence
          Length = 6095050

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = -3

Query: 21      FLHTTVGSLLATYGWYIVFSCILLYVVFQKLS 52
               F   +VGSLLATYGWYIVFSC+LLYVVFQKLS
Sbjct: 3160922 FFFFSVGSLLATYGWYIVFSCLLLYVVFQKLS 3160827



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = -1

Query: 70      VEPDVVVKRQEALAAARLKMQEELNAQV 97
               +EPDVVVKRQEALAAARLKMQEELNAQV
Sbjct: 3158566 LEPDVVVKRQEALAAARLKMQEELNAQV 3158483



 Score = 50.1 bits (118), Expect(2) = 1e-12
 Identities = 25/28 (89%), Positives = 26/28 (92%), Gaps = 1/28 (3%)
 Frame = -3

Query: 136     QEEDSPGPSTSSVL-KRKSDRKPLRGGG 162
               Q EDSPGPSTSSV+ KRKSDRKPLRGGG
Sbjct: 3157550 QGEDSPGPSTSSVIPKRKSDRKPLRGGG 3157467



 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -1

Query: 1       MERQEESLSARPALETEGLRFLHTTVGSL 29
               MER+EE LSARPALETEGLRFLH T  SL
Sbjct: 3161632 MEREEEPLSARPALETEGLRFLHVTGESL 3161546



 Score = 45.4 bits (106), Expect(2) = 1e-12
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = -2

Query: 118     MWDSMQEGKSYKGNAKKPQ 136
               MWDSMQEGKSYKGNAKKPQ
Sbjct: 3157701 MWDSMQEGKSYKGNAKKPQ 3157645


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.313    0.130    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,733,617
Number of Sequences: 2685
Number of extensions: 4617589
Number of successful extensions: 23870
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 21537
Number of HSP's gapped (non-prelim): 8214
length of query: 189
length of database: 869,524,021
effective HSP length: 123
effective length of query: 66
effective length of database: 869,193,766
effective search space: 57366788556
effective search space used: 57366788556
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)