TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378144.1| Saimiri boliviensis boliviensis unplaced genomic ...   104   2e-21
gb|JH378123.1| Saimiri boliviensis boliviensis unplaced genomic ...    56   1e-06

>gb|JH378144.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00040,
                whole genome shotgun sequence
          Length = 18451090

 Score =  104 bits (260), Expect = 2e-21
 Identities = 51/60 (85%), Positives = 52/60 (86%)
 Frame = +3

Query: 116      SSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFP 175
                SSEKKYCS TGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ    +   FP
Sbjct: 14814576 SSEKKYCSHTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQVRFLILFYFP 14814755



 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 165      QCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRK 198
                QCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRK
Sbjct: 14815999 QCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRK 14816100



 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +3

Query: 62       CELPLAKSEWQKKLTPEQFYVTREKGTEP 90
                CELPLAKSEWQKKLTPEQFYVTREKGTEP
Sbjct: 14803179 CELPLAKSEWQKKLTPEQFYVTREKGTEP 14803265



 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 91       PFSGIYLNNKEAGMYHCVCCDSPLFSSEKK 120
                PFSGIYLNNKEAGMYHCVCCDSPLF  +K+
Sbjct: 14806179 PFSGIYLNNKEAGMYHCVCCDSPLFR*DKE 14806268


>gb|JH378123.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00019,
               whole genome shotgun sequence
          Length = 29834108

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +2

Query: 161     VVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKP 196
               V+  QC AHLGH+F DGP P G+R+CINS AL F P
Sbjct: 8369168 VLLFQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 8369275


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,841,993
Number of Sequences: 2685
Number of extensions: 10057637
Number of successful extensions: 46839
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 39763
Number of HSP's gapped (non-prelim): 23724
length of query: 199
length of database: 869,524,021
effective HSP length: 124
effective length of query: 75
effective length of database: 869,191,081
effective search space: 65189331075
effective search space used: 65189331075
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)