TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378281.1| Saimiri boliviensis boliviensis unplaced genomic ...   117   2e-32
gb|JH378134.1| Saimiri boliviensis boliviensis unplaced genomic ...   114   1e-24

>gb|JH378281.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00177,
              whole genome shotgun sequence
          Length = 3145756

 Score =  117 bits (293), Expect(2) = 2e-32
 Identities = 63/96 (65%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
 Frame = -2

Query: 22     VCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHE 81
              V AKCG+EL SS S Y HS PW  FT+T+H+DSVAK  EH+  EALKVSC KCGN L  E
Sbjct: 408963 VRAKCGHELISSLS*YTHSFPWWVFTKTVHSDSVAKCLEHSHPEALKVSCVKCGNVLSLE 408784

Query: 82     FLNDGPKPGQSRFX-IFSSSLKFVPKGKETSASQGH 116
              FLN  P  G      IFSSSLKFVPKGKET AS+GH
Sbjct: 408783 FLNVAPSCGHRDSE*IFSSSLKFVPKGKETFASKGH 408676



 Score = 43.1 bits (100), Expect(2) = 2e-32
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = -1

Query: 3      FCSFFGGEVFQNHFEPGVYVC 23
              F SFFGGEVFQNHFEPGV  C
Sbjct: 409018 FHSFFGGEVFQNHFEPGVCAC 408956


>gb|JH378134.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00030,
                whole genome shotgun sequence
          Length = 22521080

 Score =  114 bits (284), Expect = 1e-24
 Identities = 53/61 (86%), Positives = 55/61 (90%)
 Frame = +1

Query: 19       GVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGL 78
                G+YVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKV     G G+
Sbjct: 16038901 GIYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVRGHGDGGGM 16039080

Query: 79       G 79
                G
Sbjct: 16039081 G 16039083



 Score = 85.5 bits (210), Expect = 4e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 66       ALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQG 115
                + +VSCGKCGNGLGHEFLNDGPKPGQSRF IFSSSLKFVPKG+    S G
Sbjct: 16039419 SFQVSCGKCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFVPKGELALHSWG 16039568



 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 1        MSFCSFFGGEVFQNHFEPG 19
                MSFCSFFGGEVFQNHFEPG
Sbjct: 16036669 MSFCSFFGGEVFQNHFEPG 16036725


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,683,852
Number of Sequences: 2685
Number of extensions: 7878829
Number of successful extensions: 31703
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 26420
Number of HSP's gapped (non-prelim): 16840
length of query: 116
length of database: 869,524,021
effective HSP length: 91
effective length of query: 25
effective length of database: 869,279,686
effective search space: 21731992150
effective search space used: 21731992150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)