TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo
sapiens # Complete
         (397 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378252.1| Saimiri boliviensis boliviensis unplaced genomic ...   150   9e-35
gb|JH378161.1| Saimiri boliviensis boliviensis unplaced genomic ...    62   4e-08
gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic ...    62   7e-08

>gb|JH378252.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00148,
               whole genome shotgun sequence
          Length = 4400728

 Score =  150 bits (380), Expect = 9e-35
 Identities = 73/108 (67%), Positives = 79/108 (73%)
 Frame = -1

Query: 93      VGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGXX 152
               V +  +  +  DGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTG  
Sbjct: 4211215 VELFLWFVFVADGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVS 4211036

Query: 153     XXXXXXXXXXXXXXXILSHWEKYNTGILFLPWGYDISQVTISFVYIVT 200
                              ILSHWEKYNTGILFLPWGYDISQV   ++ + T
Sbjct: 4211035 VFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVVSIYLKVST 4210892



 Score =  120 bits (302), Expect = 1e-25
 Identities = 56/63 (88%), Positives = 59/63 (93%)
 Frame = -3

Query: 242     FFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFA 301
               F RSYKNNTLK NSVYEA+VP FSPCLLFILSTAWILWSPSDILE+HPR+FYFMVGTAFA
Sbjct: 4199624 FSRSYKNNTLKHNSVYEAVVPFFSPCLLFILSTAWILWSPSDILEIHPRIFYFMVGTAFA 4199445

Query: 302     NST 304
               N T
Sbjct: 4199444 NIT 4199436



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = -1

Query: 43      VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS 78
               VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS
Sbjct: 4216630 VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS 4216523



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 36/37 (97%), Positives = 36/37 (97%)
 Frame = -2

Query: 192     TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIG 228
               TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFT MIIG
Sbjct: 4209594 TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTTMIIG 4209484



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 39/92 (42%), Positives = 46/92 (50%)
 Frame = -3

Query: 302     NSTCQLIVCQMSSTRCPTLNWXXXXXXXXXXXXXXXXASYVESIXXXXXXXXXXXXHIHY 361
               N  CQLIVCQMSSTRCPTLNW                +SY+ESI            HIHY
Sbjct: 4198208 NFQCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHY 4198029

Query: 362     GVRVVKQLSSHFQIYPFSLRKPNSDXLGMEEK 393
               GVRVV  L  ++  Y F L    +  L +E +
Sbjct: 4198028 GVRVVSNLQQNW--YKFGLINGTNKCLLVERR 4197939



 Score = 64.7 bits (156), Expect = 9e-09
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = -1

Query: 366     VKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL 397
               VKQLSSHFQIYPFSLRKPNSD LGMEEKNIGL
Sbjct: 4195594 VKQLSSHFQIYPFSLRKPNSD*LGMEEKNIGL 4195499



 Score = 61.2 bits (147), Expect = 9e-08
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = -3

Query: 78      SAPGHKHVPDWVWIVVGILNFVAYTL 103
               SAPGHKHVPDWVWIVVGILNFVAYTL
Sbjct: 4214336 SAPGHKHVPDWVWIVVGILNFVAYTL 4214259



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -3

Query: 19      KYSAVDTNPLSLYVMHPFWNTIVKV 43
               +YSAVDTNPLSLYVMHPFWNTIVKV
Sbjct: 4217123 QYSAVDTNPLSLYVMHPFWNTIVKV 4217049


>gb|JH378161.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00057,
               whole genome shotgun sequence
          Length = 15281321

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +2

Query: 86      PDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 132
               P W +I      F+  +LD +DGKQARRTNSS+PLGELFDHG DS S
Sbjct: 7277516 PLWAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLS 7277656


>gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035,
               whole genome shotgun sequence
          Length = 19873202

 Score = 61.6 bits (148), Expect = 7e-08
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 86      PDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 132
               P W +++  +  F+  +LD +DGKQARRTNS +PLGELFDHG DS S
Sbjct: 8083196 PYWAYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLS 8083336


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.327    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,376,125,119
Number of Sequences: 2685
Number of extensions: 22886816
Number of successful extensions: 162168
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 118766
Number of HSP's gapped (non-prelim): 106898
length of query: 397
length of database: 869,524,021
effective HSP length: 133
effective length of query: 264
effective length of database: 869,166,916
effective search space: 229460065824
effective search space used: 229460065824
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)