TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo
sapiens # Complete
         (122 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...   178   5e-44
gb|JH378106.1| Saimiri boliviensis boliviensis unplaced genomic ...   116   2e-25
gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic ...    87   1e-22
gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic ...    93   2e-18

>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score =  178 bits (451), Expect = 5e-44
 Identities = 89/98 (90%), Positives = 92/98 (93%)
 Frame = -3

Query: 24       LANGGEGMEEATVVIEHCTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTL 83
                LANGGEG+EEAT+VIEHCTS RVYG NAAALSQALRLEA ELPVKVNP KPRRGSF+VTL
Sbjct: 13716712 LANGGEGVEEATIVIEHCTS*RVYGHNAAALSQALRLEALELPVKVNPAKPRRGSFKVTL 13716533

Query: 84       LRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYL 121
                LRPD SSAELWTGIKKGPP KLKFPEPQEVVEELKKYL
Sbjct: 13716532 LRPDRSSAELWTGIKKGPPCKLKFPEPQEVVEELKKYL 13716419


>gb|JH378106.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00002,
                whole genome shotgun sequence
          Length = 71252344

 Score =  116 bits (291), Expect = 2e-25
 Identities = 60/85 (70%), Positives = 65/85 (76%)
 Frame = +1

Query: 24       LANGGEGMEEATVVIEHCTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTL 83
                LANGGEG+EEAT+V EHCTS RVYGRNAAALSQALRLEAPELPVKVNP KPRRGSFEVTL
Sbjct: 69016246 LANGGEGVEEATIVTEHCTS*RVYGRNAAALSQALRLEAPELPVKVNPAKPRRGSFEVTL 69016425

Query: 84       LRPDGSSAELWTGIKKGPPRKLKFP 108
                L P            +G P + + P
Sbjct: 69016426 LAPGRQQCGALDWD*EGAPAQTQIP 69016500



 Score = 82.4 bits (202), Expect = 4e-15
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +2

Query: 85       RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122
                RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
Sbjct: 69016430 RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 69016543


>gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00178,
              whole genome shotgun sequence
          Length = 3135667

 Score = 86.7 bits (213), Expect(2) = 1e-22
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +2

Query: 24     LANGGEGMEEATVVIEHCTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTL 83
              L NGGEG+EEATVV EH +   VYGRNAAALS+AL LE P+LPVK+N  KPRRG+F+VTL
Sbjct: 891359 LVNGGEGVEEATVVTEHYSR*CVYGRNAAALSRAL*LEVPQLPVKMNLAKPRRGNFKVTL 891538

Query: 84     LR 85
              L+
Sbjct: 891539 LQ 891544



 Score = 41.2 bits (95), Expect(2) = 1e-22
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +1

Query: 90     SAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122
              S+EL  G+++GPP KLKFP  QEVVEEL KYLS
Sbjct: 891550 SSEL--GLRRGPPHKLKFP*AQEVVEEL-KYLS 891639


>gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001,
                whole genome shotgun sequence
          Length = 72162052

 Score = 93.2 bits (230), Expect = 2e-18
 Identities = 47/49 (95%), Positives = 47/49 (95%)
 Frame = +1

Query: 42       TSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS 90
                TS RVYGRNAAALSQALRLEAPELPVKVNP KPRRGSFEVTLLRPDGSS
Sbjct: 51832336 TS*RVYGRNAAALSQALRLEAPELPVKVNPAKPRRGSFEVTLLRPDGSS 51832482



 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +2

Query: 89       SSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122
                + AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
Sbjct: 51832625 AGAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 51832726


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,978,935
Number of Sequences: 2685
Number of extensions: 3562657
Number of successful extensions: 11973
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 11114
Number of HSP's gapped (non-prelim): 3335
length of query: 122
length of database: 869,524,021
effective HSP length: 97
effective length of query: 25
effective length of database: 869,263,576
effective search space: 21731589400
effective search space used: 21731589400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)