TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000012_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Homo sapiens # Complete
         (235 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378195.1| Saimiri boliviensis boliviensis unplaced genomic ...   115   2e-24

>gb|JH378195.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00091,
               whole genome shotgun sequence
          Length = 9148357

 Score =  115 bits (287), Expect = 2e-24
 Identities = 51/55 (92%), Positives = 54/55 (98%)
 Frame = +1

Query: 181     KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGIKK 235
               +VLSEHGFGPITTDIRE QTFYYAEDYHQQYLSKNP+GYCGLGGTGVSCP+GIKK
Sbjct: 9089866 QVLSEHGFGPITTDIRERQTFYYAEDYHQQYLSKNPHGYCGLGGTGVSCPMGIKK 9090030



 Score = 91.3 bits (225), Expect = 3e-17
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = +3

Query: 71      GMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS 110
               GMGCFWGAERKFW LKGVYSTQVGFAGGYTSNPTYKEVCS
Sbjct: 8903334 GMGCFWGAERKFWALKGVYSTQVGFAGGYTSNPTYKEVCS 8903453



 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 49/71 (69%), Positives = 50/71 (70%), Gaps = 5/71 (7%)
 Frame = +2

Query: 1       MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKHHVNGNR---- 56
               MLSATRRA QLL  HSLFPVPRMG+SAS IVSPQEALPGRKE TPVA KH   G R    
Sbjct: 8712110 MLSATRRARQLL--HSLFPVPRMGDSASKIVSPQEALPGRKEPTPVAGKHRPGGGRGRRH 8712283

Query: 57      -TVEPFPEGTQ 66
                   P P G Q
Sbjct: 8712284 CACVPVPGGRQ 8712316



 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +3

Query: 111     EKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQG 146
               EKTGHAEVVRVVYQPEH+SFEELLKVFWENHDPTQG
Sbjct: 8957646 EKTGHAEVVRVVYQPEHISFEELLKVFWENHDPTQG 8957753



 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = +1

Query: 146     GMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKV 182
               GMRQGNDHGTQYRSAIYPTSAKQMEAALSSKE+YQKV
Sbjct: 8976106 GMRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQKV 8976216



 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +1

Query: 48      AKHHVNGNRTVEPFPEGTQMAVFG 71
               AKHHVNGNRTVEPFPEGTQMA+FG
Sbjct: 8866375 AKHHVNGNRTVEPFPEGTQMAIFG 8866446


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.317    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 829,543,042
Number of Sequences: 2685
Number of extensions: 12792478
Number of successful extensions: 50923
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 45497
Number of HSP's gapped (non-prelim): 20089
length of query: 235
length of database: 869,524,021
effective HSP length: 127
effective length of query: 108
effective length of database: 869,183,026
effective search space: 93871766808
effective search space used: 93871766808
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)