TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Homo sapiens # Complete
         (187 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...   182   9e-45
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...   174   1e-42
gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...   116   5e-25
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...    77   3e-13
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...    75   2e-12
gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic ...    64   5e-09
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...    55   1e-06
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...    50   4e-05
gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic ...    47   6e-04

>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score =  182 bits (461), Expect = 9e-45
 Identities = 87/90 (96%), Positives = 88/90 (97%)
 Frame = -2

Query: 47       VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106
                VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD NKEIESFARR
Sbjct: 32940148 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFARR 32939969

Query: 107      TYSVSFPMFSKIAVTGTGAHPAFKYLAQTS 136
                TYSVSFPMFSKIAVTGTGAHPAFKYLA+ S
Sbjct: 32939968 TYSVSFPMFSKIAVTGTGAHPAFKYLARES 32939879


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score =  174 bits (442), Expect = 1e-42
 Identities = 83/89 (93%), Positives = 86/89 (96%)
 Frame = -2

Query: 46     SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFAR 105
              SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFG QEPD NKEIESFAR
Sbjct: 165608 SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEIESFAR 165429

Query: 106    RTYSVSFPMFSKIAVTGTGAHPAFKYLAQ 134
              RTYSVSFPMF+KIAVT TGA+PAFKYLA+
Sbjct: 165428 RTYSVSFPMFTKIAVTSTGAYPAFKYLAR 165342



 Score =  108 bits (270), Expect = 1e-22
 Identities = 50/54 (92%), Positives = 52/54 (96%)
 Frame = -1

Query: 134    QTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187
              +TSGKEPTWN WKYLVAPDGKVVGAWDPTVSVEE+RPQITALVRKLIL KREDL
Sbjct: 165189 ETSGKEPTWNLWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILRKREDL 165028


>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score =  116 bits (291), Expect = 5e-25
 Identities = 51/86 (59%), Positives = 69/86 (80%)
 Frame = -3

Query: 47       VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106
                VSLVVNVAS+C  TD++Y AL++L ++ GP HF+VLAFPCNQFG+ EP  +KE+ESFAR+
Sbjct: 17410621 VSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK 17410442

Query: 107      TYSVSFPMFSKIAVTGTGAHPAFKYL 132
                 Y V+FP+F KI + G+   PAF++L
Sbjct: 17410441 NYGVTFPIFHKIKILGSEGEPAFRFL 17410364



 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 32/56 (57%), Positives = 41/56 (73%)
 Frame = -1

Query: 132      LAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187
                +  +S KEP WNFWKYLV P+G+VV  W P   +E +RP I ALVR+LI+ K+EDL
Sbjct: 17407767 ILDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQLIIRKKEDL 17407600


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 51/148 (34%), Positives = 67/148 (45%), Gaps = 26/148 (17%)
 Frame = -3

Query: 35       GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 94
                G+ VSL   RG   L+ NVAS  G T + Y  + +LQR LGP    VL FPCNQFG QE 
Sbjct: 15546361 GEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLVVLGFPCNQFGHQEN 15546182

Query: 95       DSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPT-------- 141
                  N+EI +  +       + ++F +F K  V G   HP F +L +   +  T        
Sbjct: 15546181 AKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFLRRPCQRPATTPRHS*PT 15546002

Query: 142      -------------WNFWKYLVAPDGKVV 156
                             WN  K+L  P G  V
Sbjct: 15546001 WSPVSLVCHNNVAWNVKKFLDGPTGAPV 15545918


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
 Frame = -2

Query: 44       RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESF 103
                RG   L+ NVAS  G T + Y  + +LQR LGP    VL+FP N FG QE   N+EI + 
Sbjct: 21100367 RGKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFGPQENAKNEEILNS 21100188

Query: 104      ARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLAQ-----------------------T 135
                 +       +  +F +F K  V G G+HP F +L +                        
Sbjct: 21100187 LKYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATALMTDPKLIT*SPV 21100008

Query: 136      SGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 176
                   +  WNF K+LV PDG  V  +       +  P I AL+
Sbjct: 21100007 CRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDIKALL 21099885


>gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00216,
              whole genome shotgun sequence
          Length = 938135

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 49/153 (32%), Positives = 62/153 (40%), Gaps = 51/153 (33%)
 Frame = +1

Query: 37     LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ---- 92
              L   +  RG V +V NVAS+ G T+ +Y  L  L          +LAFPCNQFG+Q    
Sbjct: 335227 LTPADSRRGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQVGGC 335406

Query: 93     ----------------------------------------------EPDSNKEIESFARR 106
                                                            EP SN+EI+ FA  
Sbjct: 335407 LCPRAPAPQRPGGWEWSGFGRGPGSVRAWTEGVPAPQLTRTSPLPQEPGSNEEIKEFAAG 335586

Query: 107    TYSVSFPMFSKIAVTGTGAHPAFKYL-AQTSGK 138
               Y+V F MFSKI V G  AHP +K++  Q  GK
Sbjct: 335587 -YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK 335682


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 39/70 (55%)
 Frame = -2

Query: 23       QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 82
                + FYD  A+++ G+ V    +RG   L+ NVAS  G T + +  L +LQ    P    VL
Sbjct: 22963253 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVVL 22963077

Query: 83       AFPCNQFGQQ 92
                 FPCNQFG Q
Sbjct: 22963076 GFPCNQFGHQ 22963047


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
               whole genome shotgun sequence
          Length = 45331107

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 28/136 (20%)
 Frame = +1

Query: 69      QLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESF-----ARRTYSVSFPMFSKIAVTGT 123
               +LQR LGP    VL F CNQFG  E    +EI +       R  +  S  +  K  V   
Sbjct: 8884147 ELQRRLGPRGLAVLGFRCNQFGH*ENARKEEIRNSLQYVPPRAGFESSVMLLEKCEVNRA 8884326

Query: 124     GAHPAF---------------------KYLAQTSG--KEPTWNFWKYLVAPDGKVVGAWD 160
               G+ P F                     + +  T G   +  WNF K+LV PDG  V  + 
Sbjct: 8884327 GSRPLFAVPREALPAPSAHATALMTDRELITGTPGGRSDVVWNFEKFLVGPDGVPVHRYS 8884506

Query: 161     PTVSVEEVRPQITALV 176
                     ++ P   AL+
Sbjct: 8884507 CRFQTIDIEPDTEALL 8884554


>gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225,
              whole genome shotgun sequence
          Length = 700218

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -3

Query: 59     FTDQHY-----RALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI 100
              + DQH        L  LQ +L P    VL FPCNQFG+QEP  NKEI
Sbjct: 107671 YPDQHVVPPLTAELNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEI 107531


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,272,394
Number of Sequences: 2685
Number of extensions: 7081248
Number of successful extensions: 28885
Number of sequences better than 1.0e-03: 9
Number of HSP's better than  0.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 26191
Number of HSP's gapped (non-prelim): 10046
length of query: 187
length of database: 869,524,021
effective HSP length: 123
effective length of query: 64
effective length of database: 869,193,766
effective search space: 55628401024
effective search space used: 55628401024
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)