TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic ...   127   3e-28
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...   120   4e-26
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...   112   1e-23
gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic ...   112   2e-23
gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...    98   2e-19
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...    95   3e-18
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...    82   2e-14
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    51   4e-05
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    48   4e-04

>gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225,
              whole genome shotgun sequence
          Length = 700218

 Score =  127 bits (320), Expect = 3e-28
 Identities = 57/65 (87%), Positives = 61/65 (93%)
 Frame = +3

Query: 152    LKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDI 211
              L+N+CPPTSDLLGSS+QLFWEPMKVHDIRWNFEKFLVGP GVPVM WFH+ PVSTVKSDI
Sbjct: 135576 LQNACPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPHGVPVMRWFHRIPVSTVKSDI 135755

Query: 212    LEYLK 216
              L YLK
Sbjct: 135756 LAYLK 135770



 Score =  104 bits (260), Expect = 3e-21
 Identities = 46/71 (64%), Positives = 56/71 (78%)
 Frame = -2

Query: 150    TFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKS 209
              + L +SCP  S++LG+   + W+P+KVHDIRWNFEKFLVGPDG+PVM W HQA VS VK+
Sbjct: 105455 SLL*HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHQATVSLVKA 105276

Query: 210    DILEYLKQFNT 220
              DI  YLKQF T
Sbjct: 105275 DIEAYLKQFRT 105243



 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 46/74 (62%), Positives = 53/74 (71%)
 Frame = +3

Query: 29     KVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQYPELNALQEE 88
              +VDCN  VTGTIYEYGA TL+GE YIQFKQFAGK +LFVNVA Y GL AQYP  N+    
Sbjct: 128748 QVDCNNNVTGTIYEYGAFTLSGEGYIQFKQFAGKPILFVNVATYCGLTAQYPGKNS---H 128918

Query: 89     LKNFGVIVLAFPCN 102
                +FG    + PC+
Sbjct: 128919 FNSFGSRTAS*PCS 128960



 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 36/40 (90%), Positives = 37/40 (92%)
 Frame = +3

Query: 81     ELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 120
              ELNALQEELK+ GVIVL FPCNQFGKQEPG NSEILLGLK
Sbjct: 133446 ELNALQEELKSLGVIVLGFPCNQFGKQEPGANSEILLGLK 133565



 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 32/56 (57%), Positives = 43/56 (76%)
 Frame = -2

Query: 29     KVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQYPELNA 84
              ++DC++   GTIY+Y A+ LN +EY+ FK++ GKHVLFVNVA Y GL AQYP  N+
Sbjct: 109826 QMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGLTAQYPGKNS 109659



 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 33/40 (82%), Positives = 35/40 (87%)
 Frame = -3

Query: 81     ELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 120
              ELNALQEELK FG++VL FPCNQFGKQEPG N EIL GLK
Sbjct: 107635 ELNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLK 107516



 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +3

Query: 116    LLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155
              L+  +YV PGSGFVP+FQLFEKGDVNGEKEQKVFTFLK S
Sbjct: 134046 LIHCRYVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLKVS 134165



 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = -3

Query: 115    ILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155
              I+   +YV PG GFVP+FQLFEKGDVNGEKEQKVF+FLK S
Sbjct: 107116 IMACCRYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKVS 106994



 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +3

Query: 1      MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGV 36
              M + FQASCLV  FLV FAQQTLK ++RKV   +G+
Sbjct: 125235 MIRHFQASCLVPLFLVSFAQQTLKSEDRKVSMGQGI 125342


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score =  120 bits (302), Expect = 4e-26
 Identities = 70/162 (43%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
 Frame = -2

Query: 61       GKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGL 119
                GK +L  NVA+  G   + Y ++N LQ  L   G++VL+FP N FG QE   N EIL  L
Sbjct: 21100364 GKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFGPQENAKNEEILNSL 21100185

Query: 120      KYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSD----LLGSSSQLFWEPMK 175
                KYV PG GF P+F LFEK +V G     +F FL+ + P  SD    L+     +   P+ 
Sbjct: 21100184 KYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATALMTDPKLIT*SPVC 21100005

Query: 176      VHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
                 +D+ WNFEKFLVGPDGVPV  +  +      + DI   L Q
Sbjct: 21100004 RNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDIKALLSQ 21099879


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score =  112 bits (280), Expect = 1e-23
 Identities = 66/162 (40%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
 Frame = -3

Query: 40       IYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLA 98
                +Y   AL + G E +      GK +L  NVA++ G   + Y ++N LQ  L    ++VL 
Sbjct: 15546394 VYALLALPMAGGEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLVVLG 15546215

Query: 99       FPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC-- 156
                FPCNQFG QE   N EIL  LKYV PG GF  +F LF K +VNG +   +F FL+  C  
Sbjct: 15546214 FPCNQFGHQENAKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFLRRPCQR 15546035

Query: 157      PPTSDLLGSSSQLFWEPMKV---HDIRWNFEKFLVGPDGVPV 195
                P T+      S   W P+ +   +++ WN +KFL GP G PV
Sbjct: 15546034 PATTP---RHS*PTWSPVSLVCHNNVAWNVKKFLDGPTGAPV 15545918


>gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00062,
               whole genome shotgun sequence
          Length = 14149710

 Score =  112 bits (279), Expect = 2e-23
 Identities = 48/67 (71%), Positives = 57/67 (85%)
 Frame = +1

Query: 150     TFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKS 209
               + L NSCPPTS+L+G+S +LFWEPMKVHDIRWNFEKFLVGPDG+PVM W H+  VS VK 
Sbjct: 9818491 SLL*NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTVSNVKM 9818670

Query: 210     DILEYLK 216
               DIL Y++
Sbjct: 9818671 DILLYMR 9818691



 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 37/51 (72%), Positives = 46/51 (90%)
 Frame = +1

Query: 29      KVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQY 79
               +VDC+ G++GTIYEYGALT+NGEEY+ FKQFAGK++LFVNVA+Y GL  QY
Sbjct: 9815905 QVDCHGGMSGTIYEYGALTINGEEYVPFKQFAGKYLLFVNVASY*GLTGQY 9816057



 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = +1

Query: 80      PELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 120
               PELNALQEEL  FG++VL FPCNQFGKQEPG NSEIL  LK
Sbjct: 9817477 PELNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLK 9817599



 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +3

Query: 110     GTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK-NSCPP 158
               GT+    L  +YV PG GFVP+FQLFEKGDVNG+KEQK +TFLK +  PP
Sbjct: 9817983 GTHLRTFLN-RYVRPGGGFVPNFQLFEKGDVNGDKEQKFYTFLKVSELPP 9818129


>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
 Frame = +2

Query: 108     EPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSD----LL 163
               E   N EIL  LKYV PG GF P+F LFEK +VNG     +F FL+ + P  SD    L+
Sbjct: 8940206 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGSHPLFAFLREALPAPSDDATALM 8940385

Query: 164     GSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
                    + W P+  +D+ WNFEKFLVGPDGVPV  +  +     ++ DI   L Q
Sbjct: 8940386 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALLSQ 8940547


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
 Frame = -3

Query: 87       EELKNFGVIVLAFPCNQ---FGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGE 143
                E +   G     FPC     F   E   N EIL  LKYV PG G+ P+F L +K +VNG+
Sbjct: 22959463 ERVSCCGYFFSPFPCPHSVFFLP*ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQ 22959284

Query: 144      KEQKVFTFLKNSCPPTSD----LLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWF 199
                 E  VF +LK+  P   D    L+     + W P++  D+ WNFEKFL+GP+G P   + 
Sbjct: 22959283 NEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYS 22959104

Query: 200      HQAPVSTVKSDILEYLK 216
                   P  +++ DI   LK
Sbjct: 22959103 RTFPTISIEPDIKRLLK 22959053



 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = -2

Query: 36       VTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGV 94
                +  + Y+  A++L+GE+ + F  F G+ VL  NVA+  G   + + +LN LQ       +
Sbjct: 22963259 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPR-RL 22963086

Query: 95       IVLAFPCNQFGKQEPG 110
                +VL FPCNQFG Q  G
Sbjct: 22963085 VVLGFPCNQFGHQVRG 22963038


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
               whole genome shotgun sequence
          Length = 45331107

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 53/142 (37%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
 Frame = +1

Query: 80      PELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGD 139
               P  N LQ  L   G+ VL F CNQFG  E     EI   L+YV P +GF  S  L EK +
Sbjct: 8884135 PPGNELQRRLGPRGLAVLGFRCNQFGH*ENARKEEIRNSLQYVPPRAGFESSVMLLEKCE 8884314

Query: 140     VNGEKEQKVFTFLKNSCPPTS----DLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPV 195
               VN    + +F   + + P  S     L+     +   P    D+ WNFEKFLVGPDGVPV
Sbjct: 8884315 VNRAGSRPLFAVPREALPAPSAHATALMTDRELITGTPGGRSDVVWNFEKFLVGPDGVPV 8884494

Query: 196     MHWFHQAPVSTVKSDILEYLKQ 217
                 +  +     ++ D    L Q
Sbjct: 8884495 HRYSCRFQTIDIEPDTEALLSQ 8884560


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 36/89 (40%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -2

Query: 65       LFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVC 123
                L VNVA+  G   Q Y  L  LQ +L      VLAFPCNQFG+QEP  N EI    +   
Sbjct: 32940142 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFARRT- 32939966

Query: 124      PGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152
                    +  SF +F K  V G      F +L
Sbjct: 32939965 ----YSVSFPMFSKIAVTGTGAHPAFKYL 32939891


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 28/52 (53%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -2

Query: 65     LFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEI 115
              L VNVA+  G   Q Y  L  LQ +L      VLAFPCNQFG QEP  N EI
Sbjct: 165599 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEI 165444


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 744,145,301
Number of Sequences: 2685
Number of extensions: 11582857
Number of successful extensions: 38162
Number of sequences better than 1.0e-03: 9
Number of HSP's better than  0.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 35080
Number of HSP's gapped (non-prelim): 11939
length of query: 221
length of database: 869,524,021
effective HSP length: 126
effective length of query: 95
effective length of database: 869,185,711
effective search space: 82572642545
effective search space used: 82572642545
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)