TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...   375   e-102
gb|JH378253.1| Saimiri boliviensis boliviensis unplaced genomic ...   148   3e-34
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    63   2e-08

>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score =  375 bits (962), Expect = e-102
 Identities = 184/194 (94%), Positives = 187/194 (96%)
 Frame = -2

Query: 72       YKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSA 131
                Y QVKLGEDAPNSSVV VS  EGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSA
Sbjct: 38189972 YHQVKLGEDAPNSSVVRVSGAEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSA 38189793

Query: 132      TXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDR 191
                T PPFTSQLPAF KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSS SFEVKKHQ+QEDR
Sbjct: 38189792 T*PPFTSQLPAFCKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSWSFEVKKHQSQEDR 38189613

Query: 192      CAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNL 251
                CAAAQ+LLERFSLPPQCRVVADRMDNNAN+AYGVAFERVCIVQRQKIAYLGGKGPFSYNL
Sbjct: 38189612 CAAAQKLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFSYNL 38189433

Query: 252      QEVRHWLEKNFSKR 265
                QEVRHWLEKNFSKR
Sbjct: 38189432 QEVRHWLEKNFSKR 38189391



 Score =  150 bits (379), Expect = 6e-35
 Identities = 76/80 (95%), Positives = 77/80 (96%)
 Frame = -2

Query: 1        MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
                MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL
Sbjct: 38198096 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 38197917

Query: 61       RCVWKSFLLDAYKQVKLGED 80
                RCVWKSFLLDAYKQV   E+
Sbjct: 38197916 RCVWKSFLLDAYKQVS*AEN 38197857


>gb|JH378253.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00149,
              whole genome shotgun sequence
          Length = 4236321

 Score =  148 bits (373), Expect = 3e-34
 Identities = 84/208 (40%), Positives = 122/208 (58%)
 Frame = -2

Query: 53     RMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATC 112
              R+ T   L+ VW    LD +KQ   G  APNS VV            +G Q +       
Sbjct: 643556 RLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVV----------LPDGFQSQ------- 643428

Query: 113    HLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAI 172
               +LD+A   RPLV+NFGS T PPF +++ AF++LV ++    DFL++YI+EAHPSDGW +
Sbjct: 643427 RILDYAQGNRPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-V 643251

Query: 173    PGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCI 232
                DS   + + +H++ EDR +AA+ L +     P C +V D M N+++ AYG  FER+ +
Sbjct: 643250 TTDS--PYIIPQHRSLEDRVSAAKVLQQG---APGCALVLDTMANSSSSAYGAYFERLYV 643086

Query: 233    VQRQKIAYLGGKGPFSYNLQEVRHWLEK 260
              +Q   I Y GG+GP  Y + E+R WLE+
Sbjct: 643085 IQSGTIMYQGGRGPDGYQVSELRTWLER 643002


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/49 (59%), Positives = 37/49 (75%)
 Frame = -2

Query: 119      SPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPS 167
                S  RPLV+NFGS T P F  +   F++L E+FSSVADFL++YI+EAH S
Sbjct: 31640731 SGNRPLVLNFGSCT*PSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS 31640585



 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = -1

Query: 168      DGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAF 227
                DGWA   +     +++ HQN +DR  AA  LL R    PQC VV D M N ++  Y    
Sbjct: 31635395 DGWAFKNN----VDIRNHQNLQDRLQAAHLLLAR---SPQCPVVVDTMQNQSSELYAALP 31635237

Query: 228      ERVCIVQRQKIAY---------LGGKGPFSYNLQEVRHWLEK 260
                ER+ I+Q  +I Y          GGKG     +Q  R W ++
Sbjct: 31635236 ERLYIIQEGRILYKVVTWG*GAQGGKG-----VQGGRAWAKR 31635126


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 865,860,507
Number of Sequences: 2685
Number of extensions: 12857019
Number of successful extensions: 55662
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 48510
Number of HSP's gapped (non-prelim): 26553
length of query: 265
length of database: 869,524,021
effective HSP length: 128
effective length of query: 137
effective length of database: 869,180,341
effective search space: 119077706717
effective search space used: 119077706717
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)