genewise output Score 989.36 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 1 MNGPEDLPKSYDYDLIIIGGGSGGLAAAKEA---- M+GPEDLP+SYDYDLIIIGGGSGGLAAAK MDGPEDLPESYDYDLIIIGGGSGGLAAAKARLLVL GL397326.1:subs45530 aggcggccgttgtgcaaagggtggcgggagaccgt tagcaatcacaaaattttgggcggtcccacgtttt gcctattcgctctctcctatcaacgattgagctgg SPP00000034_1.0 32 QYGKKVMVLDFVTPTPLGTRW +YGKKVMVLDFVTPTPLGTRW A:S[tcc] RYGKKVMVLDFVTPTPLGTRW GL397326.1:subs45635 TGTGTTGT Intron 1 CAGCCctgaagagcgtgacaccgaat <1-----[45636:47462]-1> gagaattttattcccctgcgg atcggggcgctctcgttatag SPP00000034_1.0 54 LGGTCVNVGCIPKKLMHQAALLG LGGTCVNVGCIPKKLMHQAALLG G:G[ggt] LGGTCVNVGCIPKKLMHQAALLG GL397326.1:subs47528 GGTAAGCT Intron 2 TAGGTcggatgaggtacaacaccggttg <1-----[47529:50000]-1> tggcgtatggtcaattaaccttg taaatgtgtcataaggtaatgaa SPP00000034_1.0 78 QALQDSRNYGWKVEET KHDWDRM QALQDSRNYGWKVEET KHDWDRM QALQDSRNYGWKVEET V:V[gtt] KHDWDRM GL397326.1:subs50072 cgccgtcatgtagggaGGTATGAC Intron 3 CAGTTacgtgaa actaacgaaggataac <1-----[50121:53119]-1> aaagagt acgactactagacgga gttgcag SPP00000034_1.0 102 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK GL397326.1:subs53143 agggcacagttatgtcggccgaaggtgagtgctagccaaa tactaaatgctaggagtctgaaattaaacagattgcagta aatagtctctgtgccaatgggaacctgttcgatttttgtg SPP00000034_1.0 142 ATNNKGKEKIYSAERFLIATGERPRY ATNNKGKEKIYSAERFLIATGERPRY ATNNKGKEKIYSAERFLIATGERPRY GL397326.1:subs53263 GTAATTG Intron 4 TAGgaaaagagaattggatcagaggacct <0-----[53263:53544]-0>ccaaagaaataccagtttccgagcga atttacaaattaagatctcttaaatc SPP00000034_1.0 168 LGIPGDKEYCIS DDLFSLPYCPG LGIPGDKEYCIS DDLFSLPYCPG LGIPGDKEYCIS S:S[agt] DDLFSLPYCPG GL397326.1:subs53623 tgacggagttaaAGGTAAAGA Intron 5 CAGTggctttcttcg tgtcgaaaagtg <2-----[53661:54990]-2> aattctcagcg gccttcaacccc tttccgtccgt SPP00000034_1.0 192 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM GL397326.1:subs55025 aacggggttggtgtggtcggagtggagagataccagtgcgagaaaggca actttgccatctagcgttcgtgtatctttgctttggtaaatcaatgaat gtgttaactccggttattttttaccttgtgctttaatcgcgccattacg SPP00000034_1.0 241 EEHGIKFIRQFVPIK VEQIEAGTPGR EEHGIKFIRQFVPIK VEQIEAGTPGR EEHGIKFIRQFVPIK VEQIEAGTPGR GL397326.1:subs55172 ggcgaataactgcaaGTAAGTG Intron 6 CAGggcagggacgc aaagtattgattcta<0-----[55217:58151]-0>taatacgccgg aatccgtaagtaata taataggaaca SPP00000034_1.0 267 LRVVAQSTNSEEIIEGEYNT VMLAIG LRVVAQSTNSEEIIEGEYNT V+LAIG LRVVAQSTNSEEIIEGEYNT VLLAIG GL397326.1:subs58185 cagggctaaaggaagggtaaGTAAGGA Intron 7 CAGgtcgag tgttcaccagaattagaaac<0-----[58245:59152]-0>tttctg caaatgccttgactaaattg gggaaa SPP00000034_1.0 293 RDACTRKIGLETVGVKINE TGKI RDACTRKIGLETVGVK+NE TGKI RDACTRKIGLETVGVKLNE K:K[aag] TGKI GL397326.1:subs59171 aggtaaaagtgagggacagAAGTAAGAA Intron 8 CAGGagaa gacgcgatgtactgtataa <2-----[59230:60302]-2> cgat attcaaatcaacagggata taaa SPP00000034_1.0 317 PVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK PVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK PVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK GL397326.1:subs60316 cgagggcaagctatgaggacggaggcacggacggatcgcactggtaga ctcaaaacatcatactgattaaatatcctctacggttcagtacgccta tcataagctgtcttctctaggtgggccatacgaaaggtggctatctcg SPP00000034_1.0 365 CDYENVPTTVFTPLEYGACGLSEEKA CDYENVPTTVFTPLEYGACGLSEEKA CDYENVPTTVFTPLEYGACGLSEEKA GL397326.1:subs60460 GTGAGTG Intron 9 CAGtgtgagcaagtactgtggtgctggag <0-----[60460:63803]-0>gaaaatcccttcctaagcggtcaaac tctattactatttgattttcttggat SPP00000034_1.0 391 VEKFGEENIE VYHSYFWPLEWTIPSR VEKFGEENIE VYHSYFWPLEWTIPSR VEKFGEENIE VYHSYFWPLEWTIPSR GL397326.1:subs63882 ggatgggaagGTAAGTT Intron 10 TAGgtcatttctgtaacta taatgaaata<0-----[63912:66488]-0>taagatgctagctccg gggtgaattg tcttctgagagattaa SPP00000034_1.0 417 DNNKCYAKIICNTKDN ERVVGFHVLG DNNKCYAKIICNTKDN ERVVGFHVLG DNNKCYAKIICNTKDN ERVVGFHVLG GL397326.1:subs66537 gaaattgaaataaagaGTAAGTG Intron 11 TAGgcgggtcgcg aaaagacattgacaaa<0-----[66585:74517]-0>agttgtattg tccatcaaactttact attgctcagt SPP00000034_1.0 443 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE PNAGEVTQGFAAALKCGLTK QLDSTIGIHPVCAE PNAGEVTQGFAAALKCGLTKNQLDSTIGIHPVCAE GL397326.1:subs74548 caggggacgtgggcatgcaaaccgaaagaccgtgg cacgatcagtccctaggtcaaatagctgtactgca attaataaccatgcatagcacggccatacctctag SPP00000034_1.0 478 VFTTLSVTKRSGASILQAGC VFTTLSVTKRSGASILQAGC VFTTLSVTKRSGASILQAGC GL397326.1:subs74653 GTGGGTC Intron 12 CAGgtaattgaactggaaccggt <0-----[74653:83712]-0>ttcctctcagcgcgttacgg acaagtgcgctgacctgtcc // Making a S in phase 1 intron Making a G in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a K in phase 2 intron >GL397326.1:subseq(9230278,124655).pep MDGPEDLPESYDYDLIIIGGGSGGLAAAKARLLVLSRYGKKVMVLDFVTPTPLGTRWGLG GTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGY RVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEY CISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKI GEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVLLAIGRDAC TRKIGLETVGVKLNEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQR LYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKNQLDSTIGIHPVCA EVFTTLSVTKRSGASILQAGC // >GL397326.1:subseq(9230278,124655).[45530:83772].sp ATGGACGGCCCTGAAGATCTTCCCGAGTCCTATGACTATGACCTTATCATCATTGGAGGT GGCTCAGGAGGCCTGGCAGCTGCTAAGGCAAGGCTCCTTGTGTTGTCCCGATATGGCAAG AAGGTGATGGTCCTGGACTTTGTCACTCCCACGCCTCTTGGAACTAGATGGGGTCTTGGA GGAACATGTGTGAATGTGGGTTGCATACCTAAAAAACTGATGCATCAAGCAGCTTTGTTA GGACAAGCCCTGCAAGACTCTCGAAACTATGGATGGAAAGTCGAGGAGACAGTTAAGCAT GATTGGGACAGAATGATAGAAGCTGTACAGAATCACATTGGCTCTTTGAATTGGGGCTAC CGAGTAGCTCTGCGGGAGAAAAAAGTCGTCTATGAGAATGCTTACGGGCAATTTATTGGT CCTCATAGGATTAAGGCAACTAATAATAAAGGCAAAGAAAAAATTTATTCAGCAGAGAGA TTTCTCATTGCCACTGGTGAAAGACCACGTTACTTGGGCATCCCTGGTGACAAAGAATAC TGCATCAGCAGTGATGATCTTTTCTCCTTGCCTTACTGCCCGGGTAAGACTCTGGTTGTT GGAGCATCCTATGTCGCCTTGGAGTGTGCTGGATTTCTTGCTGGTATTGGTTTAGACGTC ACTGTTATGGTTAGGTCCATTCTTCTTAGAGGATTTGACCAGGACATGGCCAACAAAATT GGTGAACACATGGAAGAACATGGCATCAAGTTTATAAGACAGTTTGTACCAATTAAAGTT GAACAAATTGAAGCGGGGACACCAGGCCGACTCAGAGTAGTAGCTCAGTCCACCAATAGT GAGGAAATCATTGAAGGAGAATATAATACGGTGTTGCTGGCAATAGGAAGAGATGCTTGC ACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAAGCTAAATGAAAAGACTGGAAAAATA CCTGTCACAGATGAAGAACAGACCAATGTGCCTTACATTTATGCCATTGGCGATATACTG GAGGATAAGGTGGAGCTCACCCCAGTTGCAATCCAGGCAGGAAGATTGCTGGCTCAGAGG CTCTATGCAGGTTCCACTGTCAAGTGTGACTATGAAAATGTTCCAACCACTGTATTTACT CCTTTGGAATATGGTGCTTGTGGCCTTTCTGAGGAGAAAGCTGTGGAGAAGTTTGGGGAA GAAAATATTGAGGTTTACCATAGTTACTTTTGGCCATTGGAATGGACAATTCCTTCAAGA GATAACAACAAATGTTACGCAAAAATAATCTGTAATACTAAAGACAATGAACGTGTTGTG GGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACACAAGGCTTCGCAGCTGCGCTC AAATGTGGACTGACCAAAAACCAGCTGGACAGCACAATTGGAATCCACCCTGTCTGTGCA GAGGTATTCACAACATTGTCTGTGACCAAGCGCTCTGGGGCAAGCATCCTTCAGGCTGGC TGC // GL397326.1:subseq(9230278,124655) GeneWise match 45530 83772 992.35 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 45530 45635 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 45636 47462 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 47463 47528 0.00 + 2 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 47529 50000 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 50001 50120 0.00 + 2 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 50121 53119 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 53120 53262 0.00 + 2 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 53263 53544 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 53545 53660 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 53661 54990 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 54991 55216 0.00 + 1 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 55217 58151 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 58152 58244 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 58245 59152 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 59153 59229 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 59230 60302 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 60303 60459 0.00 + 1 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 60460 63803 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 63804 63911 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 63912 66488 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 66489 66584 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 66585 74517 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 74518 74652 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise intron 74653 83712 0.00 + . GL397326.1:subseq(9230278,124655)-genewise-prediction-1 GL397326.1:subseq(9230278,124655) GeneWise cds 83713 83772 0.00 + 0 GL397326.1:subseq(9230278,124655)-genewise-prediction-1 //