Command line: [exonerate -m p2g --showtargetgff -q SPP00000031_1.0.fa -t SPP00000031_1.0.GL397430.1/GL397430.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo sapiens # Complete
        Target: GL397430.1:subseq(1517782,104411) dna:supercontig supercontig:Nleu1.0:GL397430.1:1:2993044:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 433
   Query range: 0 -> 115
  Target range: 54411 -> 49999

     1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProGly :    20
         |||||||||||||||||||||||||||||||||||||||! !||||||||||||||||||
         MetSerGlyGluProGlyGlnThrSerValAlaProProHisGluGluValGluProGly
 54411 : ATGAGCGGGGAGCCGGGGCAGACGTCCGTAGCGCCCCCTCACGAGGAGGTCGAGCCGGGC : 54354

    21 : SerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    30
         |||||||||||||||||||||||||||{||}            115 bp           
         SerGlyValArgIleValValGluTyr{Cy}++                         ++
 54353 : AGTGGGGTCCGCATCGTGGTGGAGTAC{TG}gt.........................ag : 54209

    31 : {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln :    49
         {|}||||||||||||||||||||||||||||||||||||||||||...            
         {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerUnkUnkUnkUnkUnk
 54208 : {T}GAACCCTGCGGCTTCGAGGCGACCTACCTGGAGCTGGCCAGTNNNNNNNNNNNNNNN : 54152

    50 : TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target Intr :    63
                              ...            ...{ }           3866 bp
         UnkUnkUnkUnkUnkUnkUnkUnkUnkUnkUnkUnkUnk{U}--                
 54151 : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN{N}nn................ : 54107

    64 : on 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu :    78
                    {!!}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{nk}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu
 54106 : .........ag{GT}GCCTTTGAGATAGAGATAAATGGACAGCTGGTGTTCTCCAAGCTG : 50199

    79 : GluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron 3 >>>>  L :    89
         ||||||||||||||||||||||||||||||            86 bp            |
         GluAsnGlyGlyPheProTyrGluLysAsp++                         ++L
 50198 : GAGAATGGGGGCTTTCCCTATGAGAAAGATgt.........................agC : 50080

    90 : euIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLysIleThrAsnSerA :   109
         ||||||||||||||||||||||||||||||||||| !!||||||||||||||||||||||
         euIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLysIleThrAsnSerA
 50079 : TCATTGAGGCCATCCGAAGAGCCAGTAACGGAGAACCCCTAGAAAAGATCACCAACAGCC : 50020

   110 : rgProProCysValIleLeu :   115
         ||||||||||||||||||||
         rgProProCysValIleLeu
 50019 : GTCCTCCGTGCGTCATCCTG : 50000

vulgar: SPP00000031_1.0 0 115 . GL397430.1:subseq(1517782,104411) 54411 49999 - 433 M 29 87 S 0 2 5 0 2 I 0 111 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 3862 3 0 2 S 1 2 M 25 75 5 0 2 I 0 82 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-12-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	gene	50000	54411	433	-	.	gene_id 1 ; sequence SPP00000031_1.0 ; gene_orientation +
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	cds	54323	54411	.	-	.	
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	exon	54323	54411	.	-	.	insertions 0 ; deletions 0
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	splice5	54321	54322	.	-	.	intron_id 1 ; splice_site "GT"
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	intron	54208	54322	.	-	.	intron_id 1
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	splice3	54208	54209	.	-	.	intron_id 0 ; splice_site "AG"
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	cds	54110	54207	.	-	.	
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	exon	54110	54207	.	-	.	insertions 0 ; deletions 0
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	splice5	54108	54109	.	-	.	intron_id 2 ; splice_site "NN"
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	intron	50244	54109	.	-	.	intron_id 2
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	splice3	50244	50245	.	-	.	intron_id 1 ; splice_site "AG"
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	cds	50167	50243	.	-	.	
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	exon	50167	50243	.	-	.	insertions 0 ; deletions 0
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	splice5	50165	50166	.	-	.	intron_id 3 ; splice_site "GT"
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	intron	50081	50166	.	-	.	intron_id 3
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	splice3	50081	50082	.	-	.	intron_id 2 ; splice_site "AG"
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	cds	50000	50080	.	-	.	
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	exon	50000	50080	.	-	.	insertions 0 ; deletions 0
GL397430.1:subseq(1517782,104411)	exonerate:protein2genome:local	similarity	50000	54411	433	-	.	alignment_id 1 ; Query SPP00000031_1.0 ; Align 54412 1 87 ; Align 54207 31 96 ; Align 50242 64 75 ; Align 50081 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis