genewise output
Score 382.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000028_1.0    1 MSTVDLARVGACILKHAVTGE                       AVELR 
                     MSTVDLARVGACILKHAVTGE                       AVELR 
                     MSTVDLARVGACILKHAVTGE                       AVELR 
GL397470.1:subs50000 aaaggcgcgggtacacggaggGTGAGGC  Intron 1   CAGgggtc 
                     tgctatcgtgcgttaactcga<0-----[50063:50203]-0>ctatg 
                     gcggctccgcgccggtggcgg                       cgggg 


SPP00000028_1.0   27 SLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEA 
                     SLWRE ACVVAGLRRFGCVVCRWIAQDLSSLAGLL QHGVRLVGVGPEA 
                     SLWRERACVVAGLRRFGCVVCRWIAQDLSSLAGLLHQHGVRLVGVGPEA 
GL397470.1:subs50219 actcgcgtggggccctgtggtctagcgcaacggcccccggccggggcgg 
                     gtggagcgttcgtggtggttgggtcaatggtcgttaaagtgttgtgcac 
                     cggggcgcggagggccgcggccgccgccccctgcgcgccgcggcggcgc 


SPP00000028_1.0   76 LGLQEFLDGDYFAG                          LYLDESKQL 
                     LGLQEFLDGDYFAG                          LYLDESKQL 
                     LGLQEFLDGDYFAG          E:E[gag]        LYLDESKQL 
GL397470.1:subs50366 cgccgtcgggttggGGTGCGTC  Intron 2   CAGAGctcggaacc 
                     tgtaattagaatcg <1-----[50409:50837]-1>  tataagaat 
                     gtgggcgcccccga                          ccgtgcggt 


SPP00000028_1.0  100 YKELGFK                          YNSLSILPAALGKPVR 
                     YKELGFK                          YNSLSI+PAALGKPVR 
                     YKELGFK           R:R[cgg]       YNSLSIVPAALGKPVR 
GL397470.1:subs50867 tagcgtaCGGTGAGTG  Intron 3   CAGGtaacaagcggcgacgc 
                     aaatgta  <2-----[50890:51486]-2> aagtgttccctgactg 
                     tgggccg                          cccgcccgatgggcgt 


SPP00000028_1.0  124 DVAAK                       AKAVGIQGNLSGDLLQSGGLL 
                     DVAAK                       AKAVGIQGNLSGDLLQSGGLL 
                     DVAAK                       AKAVGIQGNLSGDLLQSGGLL 
GL397470.1:subs51536 ggggaGTTTGTG  Intron 4   CAGgagggacgattggcccaggcc 
                     atcca<0-----[51551:51646]-0>cactgtagatcgattagggtt 
                     tgtcg                       cgttccggcgtgcgggcaggg 


SPP00000028_1.0  150 VVSK                          GDKVLLHFVQKSPGDYVPK 
                     VVSK                          GDKVLLHFVQKSPGDYVPK 
                     VVSK          G:G[ggt]        GDKVLLHFVQKSPGDYVPK 
GL397470.1:subs51710 ggaaGGTGGGTC  Intron 5   CAGGTggagccctgcatcggtgca 
                     ttga <1-----[51723:52018]-1>  gaatttattaaccgaatca 
                     gcca                          ttagggtccggtacccccg 


SPP00000028_1.0  174 EHILQVLGISAEVCASDPPQ                              
                     EHILQVLGISAEVCASDPPQ                              
                     EHILQVLGISAEVCASDPPQ                              
GL397470.1:subs52078 gcaccgcgatgggtgagccc                              
                     aattattgtccatgcgacca                              
                     gccggcgcctggctcccgtg                              


//
Making a E in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>GL397470.1:subseq(1705297,102128).pep
MSTVDLARVGACILKHAVTGEAVELRSLWRERACVVAGLRRFGCVVCRWIAQDLSSLAGL
LHQHGVRLVGVGPEALGLQEFLDGDYFAGELYLDESKQLYKELGFKRYNSLSIVPAALGK
PVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVL
GISAEVCASDPPQ
//
>GL397470.1:subseq(1705297,102128).[50000:52137].sp
ATGAGCACGGTGGACCTTGCCCGCGTGGGCGCGTGCATCCTGAAGCATGCGGTGACCGGG
GAGGCCGTGGAGTTGCGGAGCCTGTGGCGGGAGCGCGCGTGCGTGGTGGCAGGGCTGCGG
CGCTTCGGGTGCGTGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAGCCTCGCTGGGCTC
CTGCACCAGCACGGCGTGCGCCTGGTGGGCGTGGGGCCCGAGGCCCTGGGTCTGCAGGAG
TTCCTGGACGGCGACTACTTCGCGGGAGAGCTCTACCTGGATGAGAGCAAGCAGCTTTAT
AAGGAGCTGGGCTTCAAGCGGTACAACAGCCTGAGCATCGTCCCGGCAGCTCTGGGGAAG
CCCGTGCGTGATGTGGCTGCCAAGGCCAAGGCTGTTGGCATCCAGGGGAACTTGTCTGGG
GACCTGCTGCAGAGCGGAGGGCTGCTGGTGGTCAGCAAAGGTGGTGATAAAGTGCTGCTG
CATTTCGTCCAGAAGTCTCCAGGCGACTACGTCCCCAAGGAGCACATCCTGCAGGTCCTG
GGCATCTCTGCGGAGGTCTGTGCCAGCGACCCGCCTCAG
//
GL397470.1:subseq(1705297,102128)	GeneWise	match	50000	52137	382.99	+	.	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	cds	50000	50062	0.00	+	0	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	intron	50063	50203	0.00	+	.	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	cds	50204	50408	0.00	+	0	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	intron	50409	50837	0.00	+	.	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	cds	50838	50889	0.00	+	2	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	intron	50890	51486	0.00	+	.	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	cds	51487	51550	0.00	+	1	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	intron	51551	51646	0.00	+	.	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	cds	51647	51722	0.00	+	0	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	intron	51723	52018	0.00	+	.	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
GL397470.1:subseq(1705297,102128)	GeneWise	cds	52019	52137	0.00	+	2	GL397470.1:subseq(1705297,102128)-genewise-prediction-1
//