genewise output
Score 349.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_1.0    1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     M FLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MPFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
GL397364.1:subs50000 actccgcattaagattaggggcggggtgtccgaaggtctaccaggcgtc 
                     tcttaacgttctgtgctgcgctgccctctttcacatttcacaacctaat 
                     gtccgcatcccggggcttaacggttcgaggtccacgtgcgcgagcggcg 


SPP00000026_1.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     EDI+LKTLEK                          PRT+KAKELWEKN 
                     EDIELKTLEK          E:E[gaa]        PRTLKAKELWEKN 
GL397364.1:subs50147 ggagcaacgaGGTAAGTG  Intron 1   TAGAAcaatagagctgaa 
                     aatatactaa <1-----[50178:51947]-1>  cgctacaatgaaa 
                     gtaagaaggg                          agtgaaggagaat 


SPP00000026_1.0   74 GAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPL              
                     GAVIMAVRRPGCFLCRE +AD    +        P               
                     GAVIMAVRRPGCFLCREVSADEDLFREK-----DPG              
GL397364.1:subs51989 gggaaggcacgttctcggaggggctaga     gcg              
                     gctttctggcggttggatgcaaattgaa     acg              
                     atgtgcgggactcctaggtatgtacaag     ttc              


SPP00000026_1.0  110                           AVVKEHIRTEVKDFQPYFKGEIF 
                                                   E + +E+K     + G+ + 
                                Y:K[aag]       WKTSEKVESELKSTGVTL-GQAY 
GL397364.1:subs52082 AAGTAGGGG  Intron 2   CAGGtaaagaggtgtataggac gcgt 
                       <2-----[52084:55989]-2> gacgaatacataccgtct gaca 
                                               ggttggagaagatgtcca tgcc 


SPP00000026_1.0  134 LDEK                       KKFYGPQRRKMMFMGFIRLGVW 
                     L                          KKFYGP RRKMMFMGFIRLGVW 
                     L--E                       KKFYGPHRRKMMFMGFIRLGVW 
GL397364.1:subs56057 c  gGTCCGAA  Intron 3   TAGaattgccacaaatagtaccggt 
                     t  a<0-----[56063:56581]-0>aatagcaggattttgttgtgtg 
                     t  g                       agcttatgggggtgatctgagg 


SPP00000026_1.0  160 YNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ                 
                     YNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ                 
                     YNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ                 
GL397364.1:subs56648 tattcgtaggttgacggggtacgggtgggtgac                 
                     aattgcgaggtcgatagagtttggttttgcgaa                 
                     ccccacgtacctacgaaaccctgatcggaaagg                 


SPP00000026_1.0  193                        GILLEHREKEFGDKVNLLSVLEAAKM 
                                            GILLEHREKEFGDKVNLLSVLEAAKM 
                                            GILLEHREKEFGDKVNLLSVLEAAKM 
GL397364.1:subs56747 GTGAGTT  Intron 4   TAGgaccgccgagtggagacctgcgggaa 
                     <0-----[56747:61243]-0>gtttaagaaatgaatattcttaccat 
                                            cttcgcaaaatacaacatttgattgg 


SPP00000026_1.0  219 IKPQTLASEKK                                       
                     IKPQTLASEKK                                       
                     IKPQTLASEKK                                       
GL397364.1:subs61322 aaccatgtgaa                                       
                     tacactccaaa                                       
                     caagtgcagaa                                       


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>GL397364.1:subseq(2702159,106746).pep
MPFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIELKTLEKE
PRTLKAKELWEKNGAVIMAVRRPGCFLCREVSADEDLFREKDPGKWKTSEKVESELKSTG
VTLGQAYLEKKFYGPHRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVG
SGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK
//
>GL397364.1:subseq(2702159,106746).[50000:61354].sp
ATGCCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGA
GCCCTGGGGGCTGCTGCCTTGGCATTGCTGCTTGCCAACACAGACGTGTTTCTGTCCAAG
CCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGAACTGAAAACACTGGAGAAGGAA
CCAAGGACTTTGAAAGCAAAGGAGCTATGGGAAAAAAATGGAGCTGTGATTATGGCCGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGTGAGTGCAGATGAGGATCTATTCAGAGAA
AAGGATCCTGGCAAGTGGAAGACTAGTGAGAAGGTAGAGTCAGAATTGAAATCTACGGGT
GTCACCCTAGGTCAGGCCTACCTTGAGAAAAAGTTCTATGGTCCACATAGGCGGAAGATG
ATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTACAACTTCTTCCGAGCCTGGAATGGA
GGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGTGGGA
TCAGGAAAGCAGGGCATTCTTCTCGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAAC
CTACTTTCTGTTCTGGAAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAA
AAA
//
GL397364.1:subseq(2702159,106746)	GeneWise	match	50000	61354	354.34	+	.	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	cds	50000	50177	0.00	+	0	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	intron	50178	51947	0.00	+	.	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	cds	51948	52083	0.00	+	2	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	intron	52084	55989	0.00	+	.	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	cds	55990	56062	0.00	+	1	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	intron	56063	56581	0.00	+	.	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	cds	56582	56746	0.00	+	0	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	intron	56747	61243	0.00	+	.	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
GL397364.1:subseq(2702159,106746)	GeneWise	cds	61244	61354	0.00	+	0	GL397364.1:subseq(2702159,106746)-genewise-prediction-1
//