genewise output
Score 388.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000025_1.0    1 MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
GL397268.1:subs50000 aaccccccgggtgagcaggtgacgggcaaataactgagcccatca     
                     tgtttttttccccttggacccatggtcgagtataaccgcttatat     
                     ggtggtcggggtggcgcgcgctgccgccgaagggccggggcgcgt     


SPP00000025_1.0   46                           VSXGYRRVFEEYMRVISQRYPDI 
                                               VSXGYRRVFEEYMRVISQRYPDI 
                                C:C[tgt]       VSXGYRRVFEEYMRVISQRYPDI 
GL397268.1:subs50135 TGGTGAGTA  Intron 1   CAGTgttgtacgtggtacgaacctcga 
                       <2-----[50137:71277]-2> tcggaggttaaatgttgagacat 
                                               tcattgggtggcggttcggcacc 


SPP00000025_1.0   70 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSVFK 
GL397268.1:subs71348 cagggatccccatAGGTAAGAA  Intron 2   TAGAcagttctgta 
                     gtagaaatcacta  <2-----[71389:71931]-2> atccttctta 
                     ctaagtcctaaat                          taatcgacca 


SPP00000025_1.0   94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
GL397268.1:subs71963 cgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacaattcgttttctcgattccgggcaatg                  


SPP00000025_1.0  126                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
GL397268.1:subs72059 GTACGTA  Intron 3   TAGgtgtaagtttaaaagactataggtga 
                     <0-----[72059:74254]-0>tacgttttttgattaaagtccgctat 
                                            ctatggtccgccgtgcgtgaatatga 


SPP00000025_1.0  152 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
GL397268.1:subs74333 ataGGTAGGTT  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[74343:76460]-1>  tctgcatacgatcctaatta 
                     tat                          atggtaaattctacgaatta 


SPP00000025_1.0  176 ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDSIPHHRS                              
GL397268.1:subs76523 acgagaacagcagtacccct                              
                     ttaaatatatatactcaagc                              
                     ttctaggctgtgtacactaa                              


//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>GL397268.1:subseq(4085972,126582).pep
MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMR
VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE
MKLNVHMDSIPHHRS
//
>GL397268.1:subseq(4085972,126582).[50000:76582].sp
ATGAGGCTTCTGCTGCTTCTCCTGGTGGCGGCGTCTGCGATGGTCCGGAGCGAGGCCTCG
GCCAATCTGGGCGGCGTGCCCAGCAAGAGATTAAAGATGCAGTACGCCACGGGGCCGCTG
CTCAAGTTCCAGATTTGTGTTTCCTGAGGTTATAGGCGGGTGTTTGAGGAGTACATGCGG
GTTATTAGCCAGCGGTACCCAGACATCCGCATTGAAGGAGAGAATTACCTCCCTCAACCA
ATATATAGACATATAGCATCTTTCCTGTCAGTCTTCAAACTAGTATTAATAGGCTTAATA
ATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGCATGCAAGCTCCTAGCATCTGGCAGTGG
GGCCAAGAAAATAAGGTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAG
AACCAGTGTATGTCAACAGGTGCATTTGAGATAACTTTAAATGATGTACCTGTGTGGTCT
AAACTAGAATCTGGTCACCTTCCATCCATGCAACAACTTGTTCAAATTCTTGACAATGAA
ATGAAGCTCAATGTGCATATGGATTCAATCCCACACCATCGATCA
//
GL397268.1:subseq(4085972,126582)	GeneWise	match	50000	76582	388.13	+	.	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	cds	50000	50136	0.00	+	0	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	intron	50137	71277	0.00	+	.	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	cds	71278	71388	0.00	+	1	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	intron	71389	71931	0.00	+	.	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	cds	71932	72058	0.00	+	1	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	intron	72059	74254	0.00	+	.	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	cds	74255	74342	0.00	+	0	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	intron	74343	76460	0.00	+	.	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
GL397268.1:subseq(4085972,126582)	GeneWise	cds	76461	76582	0.00	+	2	GL397268.1:subseq(4085972,126582)-genewise-prediction-1
//