genewise output
Score 399.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000023_1.0    1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQS                  
                     MSPRRTLPRPLSLC  LCLCLCLAAALGSAQS                  
                     MSPRRTLPRPLSLC--LCLCLCLAAALGSAQS                  
GL397276.1:subs 1218 aacccaccccctct  ctctctcgggcgagct                  
                     tgcggctcgctctg  tgtgtgtccctggcac                  
                     gcgggccccccgcc  ccccccgcgtgatggc                  


SPP00000023_1.0   33                           SCRDKKNCKVVFSQQELRKRLTP 
                                               SCRDKKNCKVVFSQQELRKRLTP 
                               G:G[ggg]        SCRDKKNCKVVFSQQELRKRLTP 
GL397276.1:subs 1308 GGTAAGTT  Intron 1   CAGGGttagaaataggttccgcaaccac 
                      <1-----[1309 :49991]-1>  cggaaaagatttcaaatgagtcc 
                                               atgtagctggctcggaggggaac 


SPP00000023_1.0   57 LQYHVTQEKGTE                          AFEGEYTHHKD 
                     LQYHVTQEKGTE                          AFEGEY HHKD 
                     LQYHVTQEKGTE           S:S[agt]       AFEGEYIHHKD 
GL397276.1:subs50063 cctcgacgagagAGGTAAGGT  Intron 2   CAGTgtgggtaccag 
                     taaatcaaagca  <2-----[50101:51689]-2> ctagaataaaa 
                     ggctctggagca                          ctaaacatcat 


SPP00000023_1.0   81 PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF           K:K[aag]       SETKFDSGS 
GL397276.1:subs51724 cgatatggtgacttAAGTAAGTA  Intron 3   CAGGtgaatgtgt 
                     cgtaagttggcctt  <2-----[51768:90830]-2> cacatacgc 
                     taatattttatagt                          aacatccca 


SPP00000023_1.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVI+SEAITFTDDFSYGM 
                               G:G[ggt]        WPSFHDVISSEAITFTDDFSYGM 
GL397276.1:subs90859 GGTATGTT  Intron 4   CAGGTtcttcggaatggaataggtttga 
                      <1-----[90860:176041-1>  gcctaattgcactctcaatcagt 
                                               gtacctgcttgacacatctctgg 


SPP00000023_1.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
GL397276.1:sub176113 caggaattcGTGAGTT  Intron 5   CAGtggccgcatgggcccag 
                     agtacggca<0-----[176140:18547-0>ggcatgattaagcgccg 
                     cggaacctg                       cttctgcttttgttatg 


SPP00000023_1.0  155 KRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL            
                     KRYCINSAALSFTPADSSG AEGGSGVASPAQADKAEL            
                     KRYCINSAALSFTPADSSGAAEGGSGVASPAQADKAEL            
GL397276.1:sub185530 aattaatggtttacggaaggggggagggacgcggaggc            
                     agagtaccctctcccagggccaggggtcgccacaacat            
                     aaccatgtcgtcatgtcttccgactgcccacgacaggc            


//
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>GL397276.1:subseq(842241,235643).pep
MSPRRTLPRPLSLCLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVT
QEKGTESAFEGEYIHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVISSEAITFTD
DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGAAEGGSGVA
SPAQADKAEL
//
>GL397276.1:subseq(842241,235643).[1218:185643].sp
ATGAGCCCGCGGCGGACCCTCCCCCGCCCCCTCTCGCTCTGCCTCTGCCTCTGCCTCTGC
CTGGCCGCGGCTCTGGGAAGTGCGCAGTCCGGGTCATGTAGGGATAAAAAGAACTGTAAG
GTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGGCTAACACCCCTGCAGTACCATGTCACT
CAGGAGAAAGGGACCGAAAGTGCCTTTGAAGGAGAATACATACATCACAAAGATCCTGGA
ATATATAAATGTGTTGTTTGTGGAACTCCATTGTTTAAGTCAGAAACCAAATTTGACTCC
GGCTCAGGTTGGCCTTCATTCCACGATGTGATCAGTTCTGAGGCAATCACATTCACAGAT
GACTTTTCCTATGGGATGCACAGGGTGGAAACAAGCTGCTCTCAGTGCGGTGCTCACCTT
GGGCACATTTTTGATGATGGGCCTCGTCCAACTGGGAAAAGATACTGCATAAATTCGGCT
GCCTTGTCTTTCACACCTGCGGATAGCAGTGGTGCCGCCGAGGGAGGCAGTGGGGTCGCC
AGCCCAGCCCAGGCAGACAAAGCGGAGCTC
//
GL397276.1:subseq(842241,235643)	GeneWise	match	1218	185643	400.65	+	.	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	cds	1218	1308	0.00	+	0	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	intron	1309	49991	0.00	+	.	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	cds	49992	50100	0.00	+	2	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	intron	50101	51689	0.00	+	.	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	cds	51690	51767	0.00	+	1	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	intron	51768	90830	0.00	+	.	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	cds	90831	90859	0.00	+	1	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	intron	90860	176041	0.00	+	.	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	cds	176042	176139	0.00	+	2	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	intron	176140	185478	0.00	+	.	GL397276.1:subseq(842241,235643)-genewise-prediction-1
GL397276.1:subseq(842241,235643)	GeneWise	cds	185479	185643	0.00	+	0	GL397276.1:subseq(842241,235643)-genewise-prediction-1
//