genewise output
Score 98.49 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000023_1.0   41 CKVVFSQQELRKRLTPLQYHVTQEKGTES                     
                     C++ + + E +K+LTP Q++VT+EKGTE                      
                     CELPLPKSEWQKKLTPEQFYVTREKGTEP                     
GL397271.1:subs33400 tgccccaagtcaacacgcttgaagagagcGTAAGCT  Intron 1    
                     gatctcagagaaatccaatatcgaagcac<0-----[33487:39467] 
                     tggttcgtggaggacagacccgaagagag                     


SPP00000023_1.0   70    AFEGEYTHHKDPGIYKCVVCGTPLF                      
                         F G Y ++K+ G+Y CV C +PLF                      
                        PFSGIYLNNKEAGMYHCVCCDSPLF                      
GL397271.1:subs39465 CAGctagatcaaagggatctgttgacct                      
                     -0>ctggtataaaacgtaagtggagctt                      
                        tccgccgtcgaaagtccgccttagc                      


SPP00000023_1.0   95                           SETKFDSGSGWPSF---HDVINS 
                                               SE K+ SG+GWPSF   H    S 
                                K:S[agt]       SEKKYCSGTGWPSFSEAHGTSGS 
GL397271.1:subs39543 AGGTAAGAT  Intron 2   CAGTtgaatttgagtctttggcgatgt 
                       <2-----[39545:48252]-2> caaaagcgcggcctcacagccgc 
                                               tgagcctctggtgtcgtttgtct 


SPP00000023_1.0  116 E----AITFTDDFSYGMHRVETSCSQ                        
                     +     I    D S G  R E  C Q                        
                     DESHTGILRRLDTSLGSARTEVICKQ                        
GL397271.1:subs48323 ggacagacaccgattgtgcaggatacGTGAGAT  Intron 3   CAG 
                     aagacgttggtacctgccgcattgaa<0-----[48401:50002]-0> 
                     taccagcgatgccgaaatcagcctgg                        


SPP00000023_1.0  138 CGAHLGHIFDDGPRPTGKRYCINSAALSFTP                   
                     C AHLGH+F DGP P G+R+CINS AL F P                   
                     CEAHLGHVFPDGPGPNGQRFCINSVALKFKP                   
GL397271.1:subs50003 tggccgcgtcggcgcagcattaaaggtatac                   
                     gacatgattcagcgcagagtgtagtctatac                   
                     tattatcgtttatgcttgatccctgtggcaa                   


//
Making a S in phase 2 intron
>GL397271.1:subseq(21936904,100095).pep
CELPLPKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKY
CSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVICKQCEAHLGHVFPDGPGPN
GQRFCINSVALKFKP
//
>GL397271.1:subseq(21936904,100095).[33400:50095].sp
TGTGAGCTGCCTCTTCCCAAGAGTGAGTGGCAAAAGAAGCTAACCCCAGAGCAATTCTAC
GTCACGAGAGAAAAGGGAACGGAACCGCCTTTCAGCGGGATCTACCTGAATAACAAGGAA
GCAGGAATGTATCACTGCGTGTGCTGCGATAGTCCACTGTTCAGTTCTGAGAAAAAGTAC
TGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGCTCTGATGAA
AGCCACACAGGGATCCTGAGACGTCTGGACACCTCGTTAGGATCAGCTCGCACAGAGGTC
ATCTGTAAGCAGTGTGAAGCTCATCTAGGTCACGTGTTTCCTGATGGACCTGGGCCCAAT
GGTCAGAGATTTTGCATCAACAGTGTGGCTTTGAAGTTCAAACCA
//
GL397271.1:subseq(21936904,100095)	GeneWise	match	33400	50095	103.48	+	.	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	cds	33400	33486	0.00	+	0	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	intron	33487	39467	0.00	+	.	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	cds	39468	39544	0.00	+	0	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	intron	39545	48252	0.00	+	.	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	cds	48253	48400	0.00	+	1	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	intron	48401	50002	0.00	+	.	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
GL397271.1:subseq(21936904,100095)	GeneWise	cds	50003	50095	0.00	+	0	GL397271.1:subseq(21936904,100095)-genewise-prediction-1
//