genewise output
Score 385.86 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000022_1.0    1 MGAGAETGRGQRAAPERA----ARLLWLLRGLTLGTAPRRAVRGQAGGG 
                     MGAGAE GRGQRA   R+    ARLLWLLRGL L  APRRAVRGQAGGG 
                     MGAGAEMGRGQRAERRRSGRH!ARLLWLLRGLILRAAPRRAVRGQAGGG 
GL397271.1:subs41244 agggggagagcaggcccagcc1gcccttccgcaccggcccggcgcgggg 
                     tgcgcatgggagcagggggga cgttgttggtttgcccggctggacggg 
                     ggagaggcaggggggcgcgtt ggccggcgcgccatgtgggggcagccc 


SPP00000022_1.0   46 GPGTGPGLGEA                          SLATCELPLAKS 
                     G GTGPGLGEA                          SLATCELPL KS 
                     GTGTGPGLGEA          G:E[gag]        SLATCELPLPKS 
GL397271.1:subs41389 gagagcgcgggGGTAGGAC  Intron 1   CAGAGtcgatgccccaa 
                     gcgcgcgtgac <1-----[41423:49997]-1>  ctccgatctcag 
                     gcccggaggga                          ttagtggttcgt 


SPP00000022_1.0   70 EWQKKLTPEQFYVTREKGTEP                       PFSGI 
                     EWQKKLTPEQFYVTREKGTEP                       PFSGI 
                     EWQKKLTPEQFYVTREKGTEP                       PFSGI 
GL397271.1:subs50036 gtcaacacgcttgaagagagcGTAAGCT  Intron 2   CAGctaga 
                     agaaatccaatatcgaagcac<0-----[50099:56079]-0>ctggt 
                     ggaggacagacccgaagagag                       tccgc 


SPP00000022_1.0   96 YLNNKEAGMYHCVCCDSPLF                          SEK 
                     YLNNKEAGMYHCVCCDSPLF                          SEK 
                     YLNNKEAGMYHCVCCDSPLF           S:S[agt]       SEK 
GL397271.1:subs56095 tcaaagggatctgttgacctAGGTAAGAT  Intron 3   CAGTtga 
                     ataaaacgtaagtggagctt  <2-----[56157:64864]-2> caa 
                     cgtcgaaagtccgccttagc                          tga 


SPP00000022_1.0  120 KYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ    
                     KYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEV+CKQ    
                     KYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVICKQ    
GL397271.1:subs64875 atttgagtctttggcgatgtggacagacaccgattgtgcaggatac    
                     aagcgcggcctcacagccgcaagacgttggtacctgccgcattgaa    
                     gcctctggtgtcgtttgtcttaccagcgatgccgaaatcagcctgg    


SPP00000022_1.0  166                        CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGPGPNGQRFCINSVA 
GL397271.1:subs65013 GTGAGAT  Intron 4   CAGtggccgcgtcggcgcagcattaaagg 
                     <0-----[65013:66614]-0>gacatgattcagcgcagagtgtagtc 
                                            tattatcgtttatgcttgatccctgt 


SPP00000022_1.0  192 LKFKPRKH                                          
                     LKFKPRKH                                          
                     LKFKPRKH                                          
GL397271.1:subs66693 tatacaac                                          
                     tatacgaa                                          
                     ggcaagac                                          


//
Making a E in phase 1 intron
Making a S in phase 2 intron
>GL397271.1:subseq(21920292,116716).pep
MGAGAEMGRGQRAERRRSGRHXARLLWLLRGLILRAAPRRAVRGQAGGGGTGTGPGLGEA
ESLATCELPLPKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFS
SEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVICKQCEAHLGHVFPD
GPGPNGQRFCINSVALKFKPRKH
//
>GL397271.1:subseq(21920292,116716).[41244:41297].sp
ATGGGGGCAGGGGCAGAGATGGGCAGAGGGCAGAGGGCGGAGCGGCGCCGGAGC
>GL397271.1:subseq(21920292,116716).[41308:66716].sp
GCGCGGCTCCTCTGGTTGCTCCGGGGCCTGATCCTCCGAGCTGCGCCTCGGCGGGCGGTG
CGGGGCCAAGCGGGCGGCGGCGGGACCGGCACCGGGCCGGGACTGGGGGAGGCAGAGTCT
CTTGCAACGTGTGAGCTGCCTCTTCCCAAGAGTGAGTGGCAAAAGAAGCTAACCCCAGAG
CAATTCTACGTCACGAGAGAAAAGGGAACGGAACCGCCTTTCAGCGGGATCTACCTGAAT
AACAAGGAAGCAGGAATGTATCACTGCGTGTGCTGCGATAGTCCACTGTTCAGTTCTGAG
AAAAAGTACTGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGC
TCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGACACCTCGTTAGGATCAGCTCGC
ACAGAGGTCATCTGTAAGCAGTGTGAAGCTCATCTAGGTCACGTGTTTCCTGATGGACCT
GGGCCCAATGGTCAGAGATTTTGCATCAACAGTGTGGCTTTGAAGTTCAAACCAAGGAAA
CAC
//
GL397271.1:subseq(21920292,116716)	GeneWise	match	41244	41297	23.27	+	.	GL397271.1:subseq(21920292,116716)-genewise-prediction-1
GL397271.1:subseq(21920292,116716)	GeneWise	cds	41244	41297	0.00	+	0	GL397271.1:subseq(21920292,116716)-genewise-prediction-1
GL397271.1:subseq(21920292,116716)	GeneWise	match	41308	66716	381.19	+	.	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	cds	41308	41422	0.00	+	0	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	intron	41423	49997	0.00	+	.	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	cds	49998	50098	0.00	+	2	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	intron	50099	56079	0.00	+	.	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	cds	56080	56156	0.00	+	0	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	intron	56157	64864	0.00	+	.	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	cds	64865	65012	0.00	+	1	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	intron	65013	66614	0.00	+	.	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
GL397271.1:subseq(21920292,116716)	GeneWise	cds	66615	66716	0.00	+	0	GL397271.1:subseq(21920292,116716)-genewise-prediction-2
//