Command line: [exonerate -m p2g --showtargetgff -q SPP00000015_1.0.fa -t SPP00000015_1.0.GL397313.1/GL397313.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens # Complete
        Target: GL397313.1:subseq(6485358,100140) dna:supercontig supercontig:Nleu1.0:GL397313.1:1:16672385:1 REF
         Model: protein2genome:local
     Raw score: 198
   Query range: 6 -> 132
  Target range: 38060 -> 50140

     7 : ValSerProGluGlnLeuAlaGlyPheAspLysTyrLysTyrSerAlaValAspThrAsn :    26
         :!!|||  !.!.||||||  ! !!.!.!!::!!:!!!:!|||..!::!!.!!    !::!
         LeuSerArgHisGlnLeuLysArgLeuGluGluHisArgTyrGlnSerAlaGlyArgSer
 38061 : TTGTCAAGACACCAACTAAAGCGGCTAGAAGAACACAGATATCAAAGTGCTGGACGGTCC : 38118

    27 : ProLeuSerLeuTyrValMetHisProPheTrpAsnThrIleValLysValPheProThr :    46
         ! !|||..!     !:!!|||!!.  !!:!|||.!.  !:!!|||!:!  ! !!|||:!!
         LeuLeuGlu---ProLeuMetGlnGlyTyrTrpGluTrpLeuValArgArgValProSer
 38119 : CTGCTTGAG---CCCTTAATGCAAGGGTATTGGGAATGGCTCGTTAGAAGAGTTCCCTCC : 38175

    47 : TrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuValValPheAsnPheLeu :    66
         |||:!!||||||||||||||||||.!!! !|||.!.! !:!!  !:!!! !!..  !:!!
         TrpIleAlaProAsnLeuIleThrIleIleGlyLeuSerIleAsnIleCysThrThrIle
 38176 : TGGATTGCCCCAAATCTCATCACCATCATTGGACTGTCAATAAACATCTGTACAACTATT : 38235

    67 : LeuMetAlaTyrPheAspProAspPheTyrAlaSer  >>>> Target Intron 1 > :    79
         |||:!:!.!!:!!:!  !|||     !   ! !..!           11705 bp     
         LeuLeuValPheTyrCysProThrAlaThrGluGln++                      
 38236 : TTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGgt...................... : 38276

    80 : >>>  AlaProGlyHisLysHisValProAspTrpValTrpIleValValGlyIleLeuA :    97
              :!!  !  !  !..!!!.!.!|||   |||!.!!::|||!.!  !!.!  !  ! 
            --SerTyrPheIleSerGlnAlaProLeuTrpAlaTyrIleAlaCysAlaCysGlyL
 38277 : ...ttTCTTATTTTATTTCACAGGCACCTCTGTGGGCATATATTGCTTGTGCCTGTGGCC : 50033

    98 : snPheValAlaTyrThrLeuAspGlyValAspGlyLysGlnAlaArgArgThrAsnSerS :   117
          !|||:!!  ! ! :!!||||||!.!:!!|||||||||||||||||||||||||||||||
         euPheIleTyrGlnSerLeuAspAlaIleAspGlyLysGlnAlaArgArgThrAsnSerS
 50034 : TTTTCATTTACCAGTCTTTGGATGCTATTGATGGGAAACAGGCAAGAAGAACCAATAGTA : 50093

   118 : erThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSer :   132
         ||:!!|||||||||||||||||||||||||||! !||||||   |||
         erSerProLeuGlyGluLeuPheAspHisGlyCysAspSerLeuSer
 50094 : GTTCTCCTCTGGGAGAACTTTTTGATCATGGTTGTGATTCACTATCA : 50140

vulgar: SPP00000015_1.0 6 132 . GL397313.1:subseq(6485358,100140) 38060 50140 + 198 M 23 69 G 1 0 M 48 144 5 0 2 I 0 11701 3 0 2 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	gene	38061	50140	198	+	.	gene_id 1 ; sequence SPP00000015_1.0 ; gene_orientation +
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	cds	38061	38273	.	+	.	
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	exon	38061	38273	.	+	.	insertions 0 ; deletions 1
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	splice5	38274	38275	.	+	.	intron_id 1 ; splice_site "GT"
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	intron	38274	49978	.	+	.	intron_id 1
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	splice3	49977	49978	.	+	.	intron_id 0 ; splice_site "TT"
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	cds	49979	50140	.	+	.	
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	exon	49979	50140	.	+	.	insertions 0 ; deletions 0
GL397313.1:subseq(6485358,100140)	exonerate:protein2genome:local	similarity	38061	50140	198	+	.	alignment_id 1 ; Query SPP00000015_1.0 ; Align 38061 7 69 ; Align 38130 31 144 ; Align 49979 79 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis