genewise output
Score 235.21 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000014_1.0    1 MAPRGRKRKAEAAVVAVAEKREKLANGGEGMEEATVVIEH          
                     MAPRGRKRKAEAAVVAVAEKREKLAN GEGMEEATVVIEH          
                     MAPRGRKRKAEAAVVAVAEKREKLANSGEGMEEATVVIEH          
GL397376.1:subs49842 agccgaacaggggggggggacgacgaagggagggaggagc          
                     tccgggagacaccttctcaagaatcaggagtaacctttaa          
                     gtgcgggggtgcggccacggaggggccggaggggcttcgt          


SPP00000014_1.0   41                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRLEAPE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLEAPE 
GL397376.1:subs49962 TGGTGAGGG  Intron 1   TAGCaatcgtgcagggcacgcccggcg 
                       <2-----[49964:50052]-2> cgggtaggaccctgactgtacca 
                                               gcacctgcccgcgcgggcggcag 


SPP00000014_1.0   65 LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNPTKPRRGSFEVTLLRPDGS          S:S[agt]       
GL397376.1:subs50123 ccgagacaaccagatggaccccggaAGTGAGTG  Intron 2       
                     tctataccacggggtatcttgcagg <1-----[50199:50345]    
                     taaggcgggcggcccgggggcgccc                         


SPP00000014_1.0   90      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
GL397376.1:subs50343 CAGGTggctagaaagcccacatcgccgggggtaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          ggcgtgtgggcacacactgtagggaggggcgg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>GL397376.1:subseq(2085281,100443).pep
MAPRGRKRKAEAAVVAVAEKREKLANSGEGMEEATVVIEHCTSXRVYGRNAAALSQALRL
EAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKY
LS
//
>GL397376.1:subseq(2085281,100443).[49842:50443].sp
ATGGCTCCGCGCGGGAGGAAGCGGAAGGCTGAGGCCGCGGTGGTCGCCGTAGCCGAGAAG
CGAGAGAAGCTGGCGAACAGCGGGGAGGGAATGGAGGAGGCGACCGTTGTTATCGAGCAT
TGCACGAGCTGACGCGTCTATGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTG
GAGGCCCCAGAGCTTCCAGTAAAGGTGAACCCGACGAAGCCCCGGAGGGGCAGCTTCGAG
GTGACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACTGGGATTAAGAAGGGG
CCCCCACGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAGAAGTAC
CTGTCG
//
GL397376.1:subseq(2085281,100443)	GeneWise	match	49842	50443	235.21	+	.	GL397376.1:subseq(2085281,100443)-genewise-prediction-1
GL397376.1:subseq(2085281,100443)	GeneWise	cds	49842	49963	0.00	+	0	GL397376.1:subseq(2085281,100443)-genewise-prediction-1
GL397376.1:subseq(2085281,100443)	GeneWise	intron	49964	50052	0.00	+	.	GL397376.1:subseq(2085281,100443)-genewise-prediction-1
GL397376.1:subseq(2085281,100443)	GeneWise	cds	50053	50198	0.00	+	1	GL397376.1:subseq(2085281,100443)-genewise-prediction-1
GL397376.1:subseq(2085281,100443)	GeneWise	intron	50199	50345	0.00	+	.	GL397376.1:subseq(2085281,100443)-genewise-prediction-1
GL397376.1:subseq(2085281,100443)	GeneWise	cds	50346	50443	0.00	+	2	GL397376.1:subseq(2085281,100443)-genewise-prediction-1
//