Command line: [exonerate -m p2g --showtargetgff -q SPP00000013_1.0.fa -t SPP00000013_1.0.GL397278.1/GL397278.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo sapiens # Complete
        Target: GL397278.1:subseq(19655785,149132) dna:supercontig supercontig:Nleu1.0:GL397278.1:1:35925822:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 626
   Query range: 0 -> 124
  Target range: 99132 -> 49999

     1 : MetValAlaMetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeu :    20
         |||||||||||||||||||||||||||||||||||||||! !||||||||||||||||||
         MetValAlaMetAlaAlaGlyProSerGlyCysLeuValLeuAlaPheGlyLeuArgLeu
 99132 : ATGGTAGCAATGGCGGCTGGGCCGAGTGGGTGTCTGGTGCTAGCGTTTGGGCTACGGTTG : 99075

    21 : LeuLeuAlaThrValLeuGlnAla  >>>> Target Intron 1 >>>>  ValSerA :    31
         ||||||||||||||||||||||||           10749 bp          |||||||
         LeuLeuAlaThrValLeuGlnAla++                         ++ValSerA
 99074 : TTGTTGGCGACTGTGCTTCAAGCGgt.........................agGTGTCTG : 88293

    32 : laPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuL :    51
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuL
 88292 : CTTTTGGGGCAGAATTCTCATCGGAGGCATGCAGAGAGTTAGGCTTTTCTAGCAACTTGC : 88233

    52 : euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA :    71
         ||||||||||||||||||||||||||||||||!:!|||||||||||||||||||||||||
         euCysSerSerCysAspLeuLeuGlyGlnPheSerLeuLeuGlnLeuAspProAspCysA
 88232 : TCTGCAGCTCTTGTGATCTTCTCGGACAGTTCAGCCTGCTTCAGCTGGATCCTGATTGCA : 88173

    72 : rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intro :    85
         |||||||||||||||||||||||||||||||||||||||||           21083 bp
         rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++                 
 88172 : GAGGATGCTGTCAGGAGGAAGCACAATTTGAAACCAAAAAGgt................. : 88129

    86 : n 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyArgPh :   101
                   |||||||||||||||||||||||||||||||||   ||||||||||||||
                 ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyArgPh
 88128 : ........agCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGGTT : 67000

   102 : eProGlnValGln{V}  >>>> Target Intron 3 >>>>  {al}CysProTrpPh :   110
         |||||||||||||{|}           16929 bp          {||}|||||||||||
         eProGlnValGln{V}++                         ++{al}CysProTrpPh
 66999 : CCCTCAAGTCCAA{G}gt.........................ag{TA}TGTCCGTGGTT : 50044

   111 : eArgProCysIleLysAlaPheGlyArgGlnTrpGluHisCys :   124
         |||||||||||||||||||||||||||||||||||||||||||
         eArgProCysIleLysAlaPheGlyArgGlnTrpGluHisCys
 50043 : CAGACCCTGTATTAAAGCTTTTGGACGACAATGGGAACATTGC : 50000

vulgar: SPP00000013_1.0 0 124 . GL397278.1:subseq(19655785,149132) 99132 49999 - 626 M 28 84 5 0 2 I 0 10745 3 0 2 M 56 168 5 0 2 I 0 21079 3 0 2 M 21 63 S 0 1 5 0 2 I 0 16925 3 0 2 S 1 2 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	gene	50000	99132	626	-	.	gene_id 1 ; sequence SPP00000013_1.0 ; gene_orientation +
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	cds	99049	99132	.	-	.	
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	exon	99049	99132	.	-	.	insertions 0 ; deletions 0
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	splice5	99047	99048	.	-	.	intron_id 1 ; splice_site "GT"
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	intron	88300	99048	.	-	.	intron_id 1
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	splice3	88300	88301	.	-	.	intron_id 0 ; splice_site "AG"
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	cds	88132	88299	.	-	.	
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	exon	88132	88299	.	-	.	insertions 0 ; deletions 0
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	splice5	88130	88131	.	-	.	intron_id 2 ; splice_site "GT"
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	intron	67049	88131	.	-	.	intron_id 2
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	splice3	67049	67050	.	-	.	intron_id 1 ; splice_site "AG"
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	cds	66985	67048	.	-	.	
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	exon	66985	67048	.	-	.	insertions 0 ; deletions 0
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	splice5	66983	66984	.	-	.	intron_id 3 ; splice_site "GT"
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	intron	50056	66984	.	-	.	intron_id 3
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	splice3	50056	50057	.	-	.	intron_id 2 ; splice_site "AG"
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	cds	50000	50055	.	-	.	
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	exon	50000	50055	.	-	.	insertions 0 ; deletions 0
GL397278.1:subseq(19655785,149132)	exonerate:protein2genome:local	similarity	50000	99132	626	-	.	alignment_id 1 ; Query SPP00000013_1.0 ; Align 99133 1 84 ; Align 88300 29 168 ; Align 67049 85 63 ; Align 50054 107 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis