Command line: [exonerate -m p2g --showtargetgff -q SPP00000033_1.0.fa -t SPP00000033_1.0.GL397337.1/GL397337.1.subseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: GL397337.1:subseq(11083845,40245) dna:supercontig supercontig:Nleu1.0:GL397337.1:1:11137418:1 REF
         Model: protein2genome:local
     Raw score: 340
   Query range: 198 -> 334
  Target range: 19839 -> 20245

   199 : PheArgAspAlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValValAsn :   218
         |||!:!! !.!!|||||||||!.!|||! !:!!|||||||||||||||||||||:!!|||
         PheLysValThrAlaGluGluAlaGlyMetSerValThrGlyGlyGlnThrValLeuAsn
 19840 : TTTAAAGTCACAGCAGAAGAAGCAGGAATGTCTGTAACCGGTGGCCAAACAGTATTAAAC : 19897

   219 : ProTrpIleIleIleGlyGlyValAlaThrValValCysGlnProAsnGluPheIleMet :   238
          !!|||:!!:!!:!:|||||||||.!!|||..!..!..!|||         !!.:!!   
         SerTrpValValLeuGlyGlyValThrThrThrThrAlaGln---LeuLeuLeuLeuCys
 19898 : TCCTGGGTTGTTTTGGGAGGGGTCACTACAACTACAGCCCAA---CTACTTTTATTATGC : 19954

   239 : ProAspSerAlaValValGlyAspValLeuValLeuThrLys-ProLeuGlyThrGlnVa :   258
         ! !   !!!  !  !  !||||||:!!|||  !||||||!:!#|||:!!|||.!!|||||
         GlnIleThrGlnCysTrpGlyAspIleLeuLysLeuThrArg#ProMetGlyAlaGlnVa
 19955 : CAGATAACACAGTGCTGGGGGGACATACTGAAGTTGACAAGATCCCATGGGGGCACAAGT : 20015

   259 : lAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArgTrpAsnLysValLysMetVa :   278
         ||||:!!  !!.!|||||||||||||||! !||||||!:!!! ||||||:!!|||:!:||
         lAlaMetAlaValHisGlnTrpLeuAspIleProGluLys***AsnLysIleLysLeuVa
 20016 : GGCAATGGCTGTGCACCAGTGGCTGGATATTCCTGAAAAATGAAATAAAATTAAACTAGT : 20075

   279 : lValSerArgGluGluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLe :   298
         ||||! !!:!|||!!:|||||||||.!!|||  !:!!|||:!!.!.||||||!.!  !||
         lValIleGlnGluAspValGluLeuThrTyr***LysAlaLeuMetAsnMetValGlnLe
 20076 : GGTCATCCAAGAAGATGTAGAATTAACGTACTGAAAAGCATTGATGAACATGGTCCAGCT : 20135

   299 : uAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleTh :   318
         |||||||! !|||||||||:!!|||:!! !!|||||||||||||||||||||||||||||
         uAsnArgLysAlaAlaGlyIleMetTyrProPheAsnAlaHisAlaAlaThrAspIleTh
 20136 : CAACAGGAAAGCTGCAGGAATCATGTACCCGTTCAATGCCCATGCAGCCACTGACATCAC : 20195

   319 : rGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLysGlnGlnArg :   334
         ||||||| !!:!!! !! !!!.  !||||||:!!.!!!:!|||||||||
         rGlyPheArgValTrpGluGlnValGlnAsnValThrArgGlnGlnArg
 20196 : TGGCTTCAGAGTTTGGGAACAGGTACAGAATGTGACCAGGCAGCAGAGG : 20245

vulgar: SPP00000033_1.0 198 334 . GL397337.1:subseq(11083845,40245) 19839 20245 + 340 M 34 102 G 1 0 M 19 57 F 0 1 M 82 246
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-12-01
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397337.1:subseq(11083845,40245)	exonerate:protein2genome:local	gene	19840	20245	340	+	.	gene_id 1 ; sequence SPP00000033_1.0 ; gene_orientation .
GL397337.1:subseq(11083845,40245)	exonerate:protein2genome:local	cds	19840	20245	.	+	.	
GL397337.1:subseq(11083845,40245)	exonerate:protein2genome:local	exon	19840	20245	.	+	.	insertions 0 ; deletions 1 ; frameshifts 1
GL397337.1:subseq(11083845,40245)	exonerate:protein2genome:local	similarity	19840	20245	340	+	.	alignment_id 1 ; Query SPP00000033_1.0 ; Align 19840 199 102 ; Align 19942 234 57 ; Align 20000 253 246
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis