Command line: [exonerate -m p2g --showtargetgff -q SPP00000033_1.0.fa -t SPP00000033_1.0.GL397261.1/GL397261.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: GL397261.1:subseq(67554460,101076) dna:supercontig supercontig:Nleu1.0:GL397261.1:1:74231199:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 1367
   Query range: 111 -> 431
  Target range: 50962 -> 49999

   112 : PheProAlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeu :   131
         .!.|||  !||||||||||||||||||!!!||||||||||||||||||||||||||||||
         MetProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgHisGlyGlyLeu
 50962 : ATGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCACGGTGGGCTT : 50905

   132 : SerLeuValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGly :   151
         |||!!!|||||||||||||||!:!.!!:!!|||:!!|||!!:||||||||||||||||||
         SerPheValGlnThrThrAspTyrIleHisProIleValAspAspProTyrMetMetGly
 50904 : TCCTTTGTTCAAACCACCGATTACATTCACCCGATCGTAGACGACCCTTACATGATGGGC : 50845

   152 : ArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAsp :   171
         |||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||
         ArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysAsp
 50844 : AGGATAGCATGTGCCAATGTCCTCAGTGACCTCTATGCAATGGGGGTCACGGAATGTGAC : 50785

   172 : AsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysVal :   191
         ||||||||||||||||||.!!||||||.!.!.!|||!!!!!:..!||||||!!:||||||
         AsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArgGluArgAspLysVal
 50784 : AATATGCTAATGCTCCTTGGAGTCAGTAATAAAATGACCGACAGGGAAAGGGATAAAGTG : 50725

   192 : ThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValThr :   211
         ! !||||||!!::!!:!!||||||!:!|||.!!|||||||||!.!||||||:!!||||||
         MetProLeuIleIleGlnGlyPheLysAspThrAlaGluGluAlaGlyThrSerValThr
 50724 : ATGCCTCTGATTATCCAAGGTTTTAAAGACACAGCTGAGGAAGCAGGAACGTCTGTAACG : 50665

   212 : GlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrValValCys :   231
         |||||||||||||||:!!||||||||||||:!!:!:|||||||||||||||..!||||||
         GlyGlyGlnThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThrThrValCys
 50664 : GGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTCGCTACCACTGTCTGC : 50605

   232 : GlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValLeuThr :   251
         |||||||||||||||||||||||||||!:!||||||  !|||||||||||||||||||||
         GlnProAsnGluPheIleMetProAspAsnAlaValProGlyAspValLeuValLeuThr
 50604 : CAGCCCAATGAATTTATCATGCCAGACAATGCAGTGCCAGGGGACGTGCTGGTGTTGACA : 50545

   252 : LysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArg :   271
         |||||||||||||||||||||||||||  !!.!|||||||||||||||! !||||||!:!
         LysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIleProGluLys
 50544 : AAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGTGGCTGGATATTCCTGAGAAA : 50485

   272 : TrpAsnLysValLysMetValValSerArgGluGluValGluLeuAlaTyrGlnGluAla :   291
         |||||||||:!!|||:!:||||||!!!!:!|||!!:||||||||||||||||||||||||
         TrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrGlnGluAla
 50484 : TGGAATAAGATTAAACTAGTGGTCACCCAAGAAGATGTAGAGCTGGCCTACCAGGAGGCG : 50425

   292 : MetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAla :   311
         |||.!.|||||||||! !|||||||||||||||!.!||||||||||||||||||||||||
         MetMetAsnMetAlaArgLeuAsnArgThrAlaGlyGlyLeuMetHisThrPheAsnAla
 50424 : ATGATGAACATGGCGAGGCTCAACAGGACAGCTGGAGGACTCATGCACACGTTCAATGCC : 50365

   312 : HisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLys :   331
         ||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||||
         HisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeuAlaLys
 50364 : CACGCCGCCACTGACATCACGGGCTTCGGGATTTTGGGCCATGCGCAGAACCTGGCCAAG : 50305

   332 : GlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIleIleAlaLysMetAla :   351
         |||||||||||||||||||||||||||||||||||||||! !:!!:!:|||!!.||||||
         GlnGlnArgAsnGluValSerPheValIleHisAsnLeuLeuValLeuAlaAsnMetAla
 50304 : CAGCAGAGGAACGAGGTGTCGTTTGTAATTCACAACCTCCTGGTACTGGCCAACATGGCT : 50245

   352 : AlaValSerLysAlaSerGlyArg<->PheGlyLeuLeuGlnGlyThrSerAlaGluThr :   370
         |||||||||||||||!!!|||!.!   |||||||||:!!!!.||||||!!! !!||||||
         AlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCysProGluThr
 50244 : GCGGTGAGCAAGGCCTGCGGAAACATGTTCGGCCTCATGCACGGGACCTGCCCAGAGACT : 50185

   371 : SerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysSerGluIle :   390
         |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||
         SerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysAlaGluIle
 50184 : TCAGGCGGCCTTCTGATCTGTTTACCACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATA : 50125

   391 : LysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleValGlyIleValGluLysGly :   410
         |||||| !!|||||||||||||||! !||||||||||||:!!||||||||||||||||||
         LysSerProLysTyrGlyGluGlyProGlnAlaTrpIleIleGlyIleValGluLysGly
 50124 : AAGTCCCCCAAATATGGTGAAGGCCCTCAAGCATGGATTATTGGGATTGTAGAGAAGGGC : 50065

   411 : AsnArgThrAlaArgIleIleAspLysProArgValIleGluValLeuProArgGlyAla :   430
         |||! !|||||||||||||||||||||||||||:!!|||||||||  !|||!:!! !|||
         AsnLeuThrAlaArgIleIleAspLysProArgIleIleGluValAlaProGlnValAla
 50064 : AACCTCACAGCGAGAATCATAGACAAACCCCGGATCATTGAGGTTGCACCACAAGTGGCC : 50005

   431 : Thr :   431
         |||
         Thr
 50004 : ACT : 50000

vulgar: SPP00000033_1.0 111 431 . GL397261.1:subseq(67554460,101076) 50962 49999 - 1367 M 248 744 G 0 3 M 72 216
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397261.1:subseq(67554460,101076)	exonerate:protein2genome:local	gene	50000	50962	1367	-	.	gene_id 1 ; sequence SPP00000033_1.0 ; gene_orientation .
GL397261.1:subseq(67554460,101076)	exonerate:protein2genome:local	cds	50000	50962	.	-	.	
GL397261.1:subseq(67554460,101076)	exonerate:protein2genome:local	exon	50000	50962	.	-	.	insertions 3 ; deletions 0
GL397261.1:subseq(67554460,101076)	exonerate:protein2genome:local	similarity	50000	50962	1367	-	.	alignment_id 1 ; Query SPP00000033_1.0 ; Align 50963 112 744 ; Align 50216 360 216
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis