genewise output
Score 45.86 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000011_1.0   46 SFYAFEVKDAKGRTVSLEKY                          GKV 
                     S++ F  KD  G TV+L+KY                          G V 
                     SMHEFSAKDIDGHTVNLDKY           K:R[cgg]       GFV 
GL397406.1:subs50000 tacgttgagaggcagacgatCGGTAGGCG  Intron 1   CAGGgtg 
                     ctaatccaatagactataaa  <2-----[50062:50142]-2> gtt 
                     cgcgtccgcccgcgtcgcgc                          ccg 


SPP00000011_1.0   70 SLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGES     
                      +V NVAS    T+ NY  L +LH  +    + +LAFPCNQFG+      
                     CIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ     
GL397406.1:subs50153 tagaaggtctgaaggataccggccgctggtgtcacgtctactgac     
                     gttcatccaggacataacattatacgacaggtgttctcgaatgaa     
                     ccccccccgacgcagcctgcccgccactgttggcgccttcgcggg     


SPP00000011_1.0  115                        EPRPSKEVESFARKNYGVTFPIFHKI 
                                            EP  ++E++ FA   Y V F +F KI 
                                            EPGSNEEIKEFAA-GYNVKFDMFSKI 
GL397406.1:subs50288 GTGGGCG  Intron 2   CAGgcgaaggaagtgg gtagatgataaa 
                     <0-----[50288:50432]-0>acggaaataatcc gaatatattgat 
                                            gagtcagcagccg ccccactgccgc 


SPP00000011_1.0  141 KILGSEGEPAFRFL                                    
                      + G +  P ++++                                    
                     CVNGDDAHPLWKWM                                    
GL397406.1:subs50508 tgaggggccctata                                    
                     gtagaacactgagt                                    
                     cgcgccccgggggg                                    


//
Making a R in phase 2 intron
>GL397406.1:subseq(810539,100284).pep
SMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA
FPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWM
//
>GL397406.1:subseq(810539,100284).[50000:50549].sp
TCCATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACACGGTTAACCTGGACAAGTAC
CGGGGCTTCGTGTGCATCGTCACCAACGTCGCCTCCCAGTGAGGCAAGACCGAAGTGAAC
TACACTCAGCTCGTCGACCTGCACGCCCGATACGCTGAGTGTGGTTTGCGGATCCTGGCC
TTCCCTTGTAACCAGTTCGGGAAGCAGGAGCCAGGGAGTAACGAAGAGATCAAAGAGTTC
GCCGCGGGCTACAACGTCAAATTCGATATGTTCAGCAAGATCTGCGTGAACGGGGACGAC
GCCCACCCGCTGTGGAAGTGGATG
//
GL397406.1:subseq(810539,100284)	GeneWise	match	50000	50549	45.86	+	.	GL397406.1:subseq(810539,100284)-genewise-prediction-1
GL397406.1:subseq(810539,100284)	GeneWise	cds	50000	50061	0.00	+	0	GL397406.1:subseq(810539,100284)-genewise-prediction-1
GL397406.1:subseq(810539,100284)	GeneWise	intron	50062	50142	0.00	+	.	GL397406.1:subseq(810539,100284)-genewise-prediction-1
GL397406.1:subseq(810539,100284)	GeneWise	cds	50143	50287	0.00	+	1	GL397406.1:subseq(810539,100284)-genewise-prediction-1
GL397406.1:subseq(810539,100284)	GeneWise	intron	50288	50432	0.00	+	.	GL397406.1:subseq(810539,100284)-genewise-prediction-1
GL397406.1:subseq(810539,100284)	GeneWise	cds	50433	50549	0.00	+	0	GL397406.1:subseq(810539,100284)-genewise-prediction-1
//