genewise output
Score 464.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000011_1.0    1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYA 
                     MEPLAAYPLKCSGPRAKVFAVLLS+VLCTVTLFLLQLKFLKPKINSFYA 
                     MEPLAAYPLKCSGPRAKVFAVLLSMVLCTVTLFLLQLKFLKPKINSFYA 
GL397303.1:subs50000 agccggtccattgcagagtggtctagctagactccccatcacaaaattg 
                     tactccactagcgcgcattctttctttgctcttttatattacatagtac 
                     ggttatcgaatcgcaagatatggtgtacaagattaaaaccatacccttc 


SPP00000011_1.0   50 FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
GL397303.1:subs50147 tggaggagaagtcgatagaGTAAGTT  Intron 1   GAGgtcggag 
                     tataacaggctctaaaaga<0-----[50204:50799]-0>tctttat 
                     taggtaaaatttgagtaca                       taatacg 


SPP00000011_1.0   76 ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDCQLTDRNYL LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
GL397303.1:subs50821 gagtccagaattgcagccagtgctctagtgtctactggtgcccaagggt 
                     cgagatcagaatctaataaatgccatgttctcgaatgacacgcgaatac 
                     ctccacacatcagggagcagtaaccccggttcctgtaaggccacgaaat 


SPP00000011_1.0  125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
GL397303.1:subs50968 tgaaatggatcatcaaaacgtgggcgtatcg                   
                     tcgaaagtctcttaatattgcagacctgttt                   
                     taaaccaaacccccgtgtaataaatatattt                   


SPP00000011_1.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SSKKEPRWNFWKYLVNPEGQVVK 
                               D:D[gat]        SSKKEPRWNFWKYLVNPEGQVVK 
GL397303.1:subs51061 GGTAAATA  Intron 2   TAGATttaagcatattatcgacggcgga 
                      <1-----[51062:53846]-1>  ccaaacggatgaattacagatta 
                                               taggaaggttggttcctgtatgg 


SPP00000011_1.0  180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                     FW+PEEPIEVIRPDIAALVRQVIIKKKEDL                    
                     FWRPEEPIEVIRPDIAALVRQVIIKKKEDL                    
GL397303.1:subs53918 ttacggcaggaacgaggcgacgaaaaaggc                    
                     tggcaactattgcatccttgatttaaaaat                    
                     cggaggttaccgtcaatgtaagcaagagta                    


//
Making a D in phase 1 intron
>GL397303.1:subseq(188461,104007).pep
MEPLAAYPLKCSGPRAKVFAVLLSMVLCTVTLFLLQLKFLKPKINSFYAFEVKDAKGRTV
SLEKYKGKVSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSK
EVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF
WRPEEPIEVIRPDIAALVRQVIIKKKEDL
//
>GL397303.1:subseq(188461,104007).[50000:54007].sp
ATGGAGCCTCTTGCAGCTTACCCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCA
GTTTTGCTGTCTATGGTTCTATGCACAGTAACGCTATTTCTTCTACAACTAAAATTCCTC
AAACCTAAAATCAACAGCTTTTATGCCTTTGAAGTGAAGGATGCAAAAGGAAGAACTGTT
TCTCTGGAAAAGTATAAAGGCAAAGTTTCACTAGTTGTAAACGTGGCCAGTGACTGCCAA
CTCACAGACAGAAATTACTTAGCGCTGAAGGAACTGCACAAAGAGTTTGGACCATCCCAC
TTCAGCGTGTTGGCTTTTCCCTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCAAGCAAG
GAAGTAGAATCTTTTGCAAGAAAAAACTACGGAGTAACATTCCCCATCTTCCACAAGATT
AAGATTCTAGGATCTGAAGGAGAACCTGCATTTAGATTTCTTGTTGATTCTTCAAAGAAG
GAACCAAGGTGGAATTTTTGGAAGTATCTTGTCAACCCTGAGGGTCAAGTTGTGAAGTTC
TGGAGGCCAGAGGAGCCTATTGAAGTCATCAGGCCTGACATAGCAGCTCTGGTTAGACAA
GTGATCATAAAAAAGAAAGAGGATCTA
//
GL397303.1:subseq(188461,104007)	GeneWise	match	50000	54007	464.42	+	.	GL397303.1:subseq(188461,104007)-genewise-prediction-1
GL397303.1:subseq(188461,104007)	GeneWise	cds	50000	50203	0.00	+	0	GL397303.1:subseq(188461,104007)-genewise-prediction-1
GL397303.1:subseq(188461,104007)	GeneWise	intron	50204	50799	0.00	+	.	GL397303.1:subseq(188461,104007)-genewise-prediction-1
GL397303.1:subseq(188461,104007)	GeneWise	cds	50800	51061	0.00	+	0	GL397303.1:subseq(188461,104007)-genewise-prediction-1
GL397303.1:subseq(188461,104007)	GeneWise	intron	51062	53846	0.00	+	.	GL397303.1:subseq(188461,104007)-genewise-prediction-1
GL397303.1:subseq(188461,104007)	GeneWise	cds	53847	54007	0.00	+	2	GL397303.1:subseq(188461,104007)-genewise-prediction-1
//