Command line: [exonerate -m p2g --showtargetgff -q SPP00000011_1.0.fa -t SPP00000011_1.0.GL397296.1/GL397296.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Homo sapiens # Complete
        Target: GL397296.1:subseq(750213,101796) dna:supercontig supercontig:Nleu1.0:GL397296.1:1:23911875:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 513
   Query range: 44 -> 209
  Target range: 56035 -> 49829

    45 : AsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArgThrValSerLeuGluLys :    64
         .!...!||||||! !|||:!!!.!   :!!  !::!|||!:!  !|||||||||||||||
         GlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuValSerLeuGluLys
 56035 : CAGGACTTCTACGACTTCAAGGCGGTCAACATCCGGGGCAAACTGGTGTCGCTGGAGAAG : 55978

    65 : TyrLysGlyLys  >>>> Target Intron 1 >>>>  ValSerLeuValValAsnV :    75
         |||:::|||..!           4170 bp           |||||||||||||||||||
         TyrArgGlySer++                         ++ValSerLeuValValAsnV
 55977 : TACCGCGGCTCGgt.........................agGTGTCCCTGGTGGTGAATG : 51775

    76 : alAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuGlyLeuLysGluLeuHisLysG :    95
         ||||||||!!:|||   !!!||||||!:!:!!|||! !!.!|||:!!:!!|||!!.::!!
         alAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuGlnArgA
 51774 : TGGCCAGCGAGTGCGGCTTCACAGACCAGCACTACCGAGCCCTGCAGCAGCTGCAGCGGG : 51715

    96 : luPheGlyProSerHisPheSerValLeuAlaPheProCysAsnGlnPheGlyGluSerG :   115
         !:.!.||||||  !||||||!:!||||||||||||||||||||||||||||||:!!..!|
         spLeuGlyProHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyGlnGlnG
 51714 : ACCTGGGTCCCCACCACTTCAACGTGCTCGCCTTCCCCTGCAACCAGTTTGGCCAACAGG : 51655

   116 : luProArgProSerLysGluValGluSerPheAlaArgLysAsnTyrGlyValThrPheP :   135
         |||||  !  !!:!||||||:!!|||||||||||||||:::!.!|||.!!|||:!!||||
         luProAspSerAsnLysGluIleGluSerPheAlaArgArgThrTyrSerValSerPheP
 51654 : AGCCTGACAGCAACAAGGAGATTGAGAGCTTTGCCCGCCGCACCTACAGTGTCTCATTCC : 51595

   136 : roIlePheHisLysIleLysIleLeuGlySerGluGlyGluProAlaPheArgPheLeuV :   155
         ||!!:|||  !||||||  !:!!  !|||!!!!  !.!.!.|||||||||!:!!:!|||!
         roMetPheSerLysIleAlaValThrGlyThrGlyAlaHisProAlaPheLysTyrLeuA
 51594 : CCATGTTTAGCAAGATTGCAGTCACCGGTACTGGTGCCCATCCTGCCTTCAAGTACCTGG : 51535

   156 : al{A}  >>>> Target Intron 2 >>>>  {sp}SerSerLysLysGluProArgT :   164
         .!{.}           1541 bp           {!.}!!!|||  !|||||||||! !|
         la{G}++                         ++{ln}ThrSerGlyLysGluProThrT
 51534 : CC{C}gt.........................ag{AG}ACTTCTGGGAAGGAGCCCACTT : 49967

   165 : rpAsnPheTrpLysTyrLeuValAsnProGluGlyGlnValValLysPheTrpLysProG :   184
         |||||||||||||||||||||||  !|||!!:|||:!!||||||  !  !||| ! ||| 
         rpAsnPheTrpLysTyrLeuValAlaProAspGlyLysValValGlyAlaTrpAspProT
 49966 : GGAACTTCTGGAAGTACCTTGTAGCCCCAGATGGAAAGGTGGTAGGGGCTTGGGACCCAA : 49907

   185 : luGluProIleGluValIleArgProAspIleAlaAlaLeuValArgGlnValIleIleL :   204
           ! ! !!:!:|||! !:!!||||||.!.|||.!!||||||||||||:!!:!!|||:!! 
         hrValSerValGluGluValArgProGlnIleThrAlaLeuValArgLysLeuIleLeuL
 49906 : CTGTGTCAGTGGAGGAGGTCAGACCCCAGATCACAGCGCTCGTGAGGAAGCTCATCCTAC : 49847

   205 : ysLysLysGluAspLeu :   209
          !|||::!|||||||||
         euLysArgGluAspLeu
 49846 : TGAAGCGAGAAGACTTA : 49830

vulgar: SPP00000011_1.0 44 209 . GL397296.1:subseq(750213,101796) 56035 49829 - 513 M 24 72 5 0 2 I 0 4166 3 0 2 M 87 261 S 0 1 5 0 2 I 0 1537 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-30
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	gene	49830	56035	513	-	.	gene_id 1 ; sequence SPP00000011_1.0 ; gene_orientation +
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	cds	55964	56035	.	-	.	
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	exon	55964	56035	.	-	.	insertions 0 ; deletions 0
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	splice5	55962	55963	.	-	.	intron_id 1 ; splice_site "GT"
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	intron	51794	55963	.	-	.	intron_id 1
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	splice3	51794	51795	.	-	.	intron_id 0 ; splice_site "AG"
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	cds	51532	51793	.	-	.	
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	exon	51532	51793	.	-	.	insertions 0 ; deletions 0
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	splice5	51530	51531	.	-	.	intron_id 2 ; splice_site "GT"
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	intron	49991	51531	.	-	.	intron_id 2
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	splice3	49991	49992	.	-	.	intron_id 1 ; splice_site "AG"
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	cds	49830	49990	.	-	.	
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	exon	49830	49990	.	-	.	insertions 0 ; deletions 0
GL397296.1:subseq(750213,101796)	exonerate:protein2genome:local	similarity	49830	56035	513	-	.	alignment_id 1 ; Query SPP00000011_1.0 ; Align 56036 45 72 ; Align 51794 69 261 ; Align 49989 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis