genewise output
Score 58.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000010_1.0   23 QDFYDFKAVNIRGKLVSLEKY                          GS 
                     + +++F A +I G  V+L+KY                          G  
                     RSMHEFSAKDIDGHTVNLDKY           R:R[cgg]       GF 
GL397406.1:subs50000 ctacgttgagaggcagacgatCGGTAGGCG  Intron 1   CAGGgt 
                     gctaatccaatagactataaa  <2-----[50065:50145]-2> gt 
                     ccgcgtccgcccgcgtcgcgc                          cc 


SPP00000010_1.0   47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ    
                     V +V NVAS+ G T+ +Y  L  L        + +LAFPCNQFG+Q    
                     VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ    
GL397406.1:subs50153 gtagaaggtctgaaggataccggccgctggtgtcacgtctactgac    
                     tgttcatccaggacataacattatacgacaggtgttctcgaatgaa    
                     gccccccccgacgcagcctgcccgccactgttggcgccttcgcggg    


SPP00000010_1.0   93                        EPDSNKEIESFARRTYSVSFPMFSKI 
                                            EP SN+EI+ FA   Y+V F MFSKI 
                                            EPGSNEEIKEFAAG-YNVKFDMFSKI 
GL397406.1:subs50291 GTGGGCG  Intron 2   CAGgcgaaggaagtggg tagatgataaa 
                     <0-----[50291:50435]-0>acggaaataatccg aatatattgat 
                                            gagtcagcagccgc cccactgccgc 


SPP00000010_1.0  119 AVTGTGAHPAFKYL                                    
                      V G  AHP +K++                                    
                     CVNGDDAHPLWKWM                                    
GL397406.1:subs50511 tgaggggccctata                                    
                     gtagaacactgagt                                    
                     cgcgccccgggggg                                    


//
Making a R in phase 2 intron
>GL397406.1:subseq(810536,100573).pep
RSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRIL
AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWM
//
>GL397406.1:subseq(810536,100573).[50000:50552].sp
CGCTCCATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACACGGTTAACCTGGACAAG
TACCGGGGCTTCGTGTGCATCGTCACCAACGTCGCCTCCCAGTGAGGCAAGACCGAAGTG
AACTACACTCAGCTCGTCGACCTGCACGCCCGATACGCTGAGTGTGGTTTGCGGATCCTG
GCCTTCCCTTGTAACCAGTTCGGGAAGCAGGAGCCAGGGAGTAACGAAGAGATCAAAGAG
TTCGCCGCGGGCTACAACGTCAAATTCGATATGTTCAGCAAGATCTGCGTGAACGGGGAC
GACGCCCACCCGCTGTGGAAGTGGATG
//
GL397406.1:subseq(810536,100573)	GeneWise	match	50000	50552	58.36	+	.	GL397406.1:subseq(810536,100573)-genewise-prediction-1
GL397406.1:subseq(810536,100573)	GeneWise	cds	50000	50064	0.00	+	0	GL397406.1:subseq(810536,100573)-genewise-prediction-1
GL397406.1:subseq(810536,100573)	GeneWise	intron	50065	50145	0.00	+	.	GL397406.1:subseq(810536,100573)-genewise-prediction-1
GL397406.1:subseq(810536,100573)	GeneWise	cds	50146	50290	0.00	+	1	GL397406.1:subseq(810536,100573)-genewise-prediction-1
GL397406.1:subseq(810536,100573)	GeneWise	intron	50291	50435	0.00	+	.	GL397406.1:subseq(810536,100573)-genewise-prediction-1
GL397406.1:subseq(810536,100573)	GeneWise	cds	50436	50552	0.00	+	0	GL397406.1:subseq(810536,100573)-genewise-prediction-1
//