Command line: [exonerate -m p2g --showtargetgff -q SPP00000010_1.0.fa -t SPP00000010_1.0.GL397312.1/GL397312.1.subseq] Hostname: [upf-OptiPlex-755] C4 Alignment: ------------ Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete Target: GL397312.1:subseq(15869586,100206) dna:supercontig supercontig:Nleu1.0:GL397312.1:1:16802348:1 REF:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 22 -> 92 Target range: 50206 -> 49999 23 : GlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuValSerLeuGluLys : 42 :!!..!|||||||||.!!!..|||:!!!:!:!: !|||:!! !|||..!!!!.!.! ! LysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLysValAspPheAsnThr 50206 : AAGTCCTTCTATGACCTCAGTGCAATCAGCCTGGATGGGGAGAAGGTAGATTTCAATACG : 50149 43 : TyrArgGlySerValSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGln : 62 !:!||||||!!!!.! !|||:!!! !|||||||||||| !! ||| ||| !!:! PheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***GlyThrThrThrArg 50148 : TTCCGGGGCAGGGCCGTGCTGATTGAGAATGTGGCTTCACTCTGAGGCACAACCACCCGG : 50089 63 : HisTyrArgAlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeu : 82 !!!:!! ! !|||.!.:!!|||||| !! !!!! |||...!.!.!. |||||| AspPheThrGlnLeuAsnGluLeuGlnCysArgPhe---ProArgArgLeuValValLeu 50088 : GACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTT---CCCAGGCGCCTGGTGGTCCTT : 50032 83 : AlaPheProCysAsnGlnPheGlyGlnGln : 92 !.!|||||||||||||||||||||!!.||| GlyPheProCysAsnGlnPheGlyHisGln 50031 : GGCTTCCCCTGCAACCAATTTGGACATCAG : 50000 vulgar: SPP00000010_1.0 22 92 . GL397312.1:subseq(15869586,100206) 50206 49999 - 126 M 52 156 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2012-11-30 ##type DNA # # # seqname source feature start end score strand frame attributes # GL397312.1:subseq(15869586,100206) exonerate:protein2genome:local gene 50000 50206 126 - . gene_id 1 ; sequence SPP00000010_1.0 ; gene_orientation . GL397312.1:subseq(15869586,100206) exonerate:protein2genome:local cds 50000 50206 . - . GL397312.1:subseq(15869586,100206) exonerate:protein2genome:local exon 50000 50206 . - . insertions 0 ; deletions 1 GL397312.1:subseq(15869586,100206) exonerate:protein2genome:local similarity 50000 50206 126 - . alignment_id 1 ; Query SPP00000010_1.0 ; Align 50207 23 156 ; Align 50051 76 51 # --- END OF GFF DUMP --- # -- completed exonerate analysis