genewise output
Score 198.01 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000010_1.0   25 FYDFKAVNIRGKLVSLEKYRGS                       VSLV 
                     FY F+  + +G+ VSLEKY+G                        VSLV 
                     FYAFEVKDAKGRTVSLEKYKGK                       VSLV 
GL397303.1:subs49081 ttgtggaggagaagtcgatagaGTAAGTT  Intron 1   GAGgtcg 
                     tactataacaggctctaaaaga<0-----[49147:49742]-0>tctt 
                     ttctaggtaaaatttgagtaca                       taat 


SPP00000010_1.0   51 VNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKE 
                     VNVAS+C +TD++Y AL++L ++ GP HF+VLAFPCNQFG+ EP  +KE 
                     VNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKE 
GL397303.1:subs49755 gaggagtccagaattgcagccagtgctctagtgtctactggtgcccaag 
                     tatcgagatcagaatctaataaatgccatgttctcgaatgacacgcgaa 
                     acgctccacacatcagggagcagtaaccccggttcctgtaaggccacga 


SPP00000010_1.0  100 IESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA                
                     +ESFAR+ Y V+FP+F KI + G+   PAF++L                 
                     VESFARKNYGVTFPIFHKIKILGSEGEPAFRFLV                
GL397303.1:subs49902 ggttgaaatggatcatcaaaacgtgggcgtatcg                
                     tactcgaaagtctcttaatattgcagacctgttt                
                     aattaaaccaaacccccgtgtaataaatatattt                


SPP00000010_1.0  134                           TSGKEPTWNFWKYLVAPDGKVVG 
                                               +S KEP WNFWKYLV P+G+VV  
                               Q:D[gat]        SSKKEPRWNFWKYLVNPEGQVVK 
GL397303.1:subs50004 GGTAAATA  Intron 2   TAGATttaagcatattatcgacggcgga 
                      <1-----[50005:52789]-1>  ccaaacggatgaattacagatta 
                                               taggaaggttggttcctgtatgg 


SPP00000010_1.0  158 AWDPTVSVEEVRPQITALVRKLILLKREDL                    
                      W P   +E +RP I ALVR++I+ K+EDL                    
                     FWRPEEPIEVIRPDIAALVRQVIIKKKEDL                    
GL397303.1:subs52861 ttacggcaggaacgaggcgacgaaaaaggc                    
                     tggcaactattgcatccttgatttaaaaat                    
                     cggaggttaccgtcaatgtaagcaagagta                    


//
Making a D in phase 1 intron
>GL397303.1:subseq(189518,102950).pep
FYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAF
PCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNF
WKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIKKKEDL
//
>GL397303.1:subseq(189518,102950).[49081:52950].sp
TTTTATGCCTTTGAAGTGAAGGATGCAAAAGGAAGAACTGTTTCTCTGGAAAAGTATAAA
GGCAAAGTTTCACTAGTTGTAAACGTGGCCAGTGACTGCCAACTCACAGACAGAAATTAC
TTAGCGCTGAAGGAACTGCACAAAGAGTTTGGACCATCCCACTTCAGCGTGTTGGCTTTT
CCCTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCAAGCAAGGAAGTAGAATCTTTTGCA
AGAAAAAACTACGGAGTAACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCTGAA
GGAGAACCTGCATTTAGATTTCTTGTTGATTCTTCAAAGAAGGAACCAAGGTGGAATTTT
TGGAAGTATCTTGTCAACCCTGAGGGTCAAGTTGTGAAGTTCTGGAGGCCAGAGGAGCCT
ATTGAAGTCATCAGGCCTGACATAGCAGCTCTGGTTAGACAAGTGATCATAAAAAAGAAA
GAGGATCTA
//
GL397303.1:subseq(189518,102950)	GeneWise	match	49081	52950	198.01	+	.	GL397303.1:subseq(189518,102950)-genewise-prediction-1
GL397303.1:subseq(189518,102950)	GeneWise	cds	49081	49146	0.00	+	0	GL397303.1:subseq(189518,102950)-genewise-prediction-1
GL397303.1:subseq(189518,102950)	GeneWise	intron	49147	49742	0.00	+	.	GL397303.1:subseq(189518,102950)-genewise-prediction-1
GL397303.1:subseq(189518,102950)	GeneWise	cds	49743	50004	0.00	+	0	GL397303.1:subseq(189518,102950)-genewise-prediction-1
GL397303.1:subseq(189518,102950)	GeneWise	intron	50005	52789	0.00	+	.	GL397303.1:subseq(189518,102950)-genewise-prediction-1
GL397303.1:subseq(189518,102950)	GeneWise	cds	52790	52950	0.00	+	2	GL397303.1:subseq(189518,102950)-genewise-prediction-1
//