Command line: [exonerate -m p2g --showtargetgff -q SPP00000010_1.0.fa -t SPP00000010_1.0.GL397293.1/GL397293.1.subseq] Hostname: [upf-OptiPlex-755] C4 Alignment: ------------ Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete Target: GL397293.1:subseq(12689331,100191) dna:supercontig supercontig:Nleu1.0:GL397293.1:1:24368595:1 REF:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 34 -> 98 Target range: 50191 -> 49999 35 : GlyLysLeuValSerLeuGluLysTyrArgGlySerValSerLeuValValAsnValAla : 54 |||:!!! !|||||||||! ... |||! !!.!||| !|||:!!! !||||||||| GlyGluProValSerLeuGlySerLeuArgAspLysValLeuLeuIleGluAsnValAla 50191 : GGGGAGCCTGTGAGCCTGGGCTCCCTGCGGGACAAGGTGCTACTTATCGAGAATGTGGCG : 50134 55 : SerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuGlnArgAspLeu : 74 ||| !! ||| !|||! !::! !!|||! ! !:!!.!.:!!||||||||| !||| SerLeu***GlyThrThrGlyArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeu 50133 : TCCCTCTGAGGCACCACGGGCAGGGACTACACCCAGATGAACGAGCTGCAGCGGCGCCTC : 50074 75 : GlyProHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyGlnGlnGluPro : 94 ||||||!.. !.!. ||||||!.!|||||||||||||||||||||!!.|||||| !! GlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGlnGluThr 50073 : GGGCCCCGGGGCCTGGTGGTGCTCGGCTTCCCGTGCAACCAGTTTGGGCATCAGGAGACG : 50014 95 : AspSerAsnLys : 98 !!!!..||| ProArgThrLys 50013 : CCAAGAACGAAG : 50000 vulgar: SPP00000010_1.0 34 98 . GL397293.1:subseq(12689331,100191) 50191 49999 - 141 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2012-11-30 ##type DNA # # # seqname source feature start end score strand frame attributes # GL397293.1:subseq(12689331,100191) exonerate:protein2genome:local gene 50000 50191 141 - . gene_id 1 ; sequence SPP00000010_1.0 ; gene_orientation . GL397293.1:subseq(12689331,100191) exonerate:protein2genome:local cds 50000 50191 . - . GL397293.1:subseq(12689331,100191) exonerate:protein2genome:local exon 50000 50191 . - . insertions 0 ; deletions 0 GL397293.1:subseq(12689331,100191) exonerate:protein2genome:local similarity 50000 50191 141 - . alignment_id 1 ; Query SPP00000010_1.0 ; Align 50192 35 192 # --- END OF GFF DUMP --- # -- completed exonerate analysis