Command line: [exonerate -m p2g --showtargetgff -q SPP00000009_1.0.fa -t SPP00000009_1.0.GL397312.1/GL397312.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
        Target: GL397312.1:subseq(15866587,103211) dna:supercontig supercontig:Nleu1.0:GL397312.1:1:16802348:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 302
   Query range: 35 -> 216
  Target range: 53211 -> 49999

    36 : ValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyGluGluTyrIleGln :    55
         :!!.!!  !:!!.!!|||!!:  !.!!|||:!!!:!|||:!!||||||:!!   :!!.!.
         IleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys---ValAsp
 53211 : ATTGCCAAGTCCTTCTATGACCTCAGTGCAATCAGCCTGGATGGGGAGAAG---GTAGAT : 53157

    56 : PheLysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeu :    75
         |||!!.  !|||  !|||!:!  !||||||.!!! !|||||||||:!!  !   |||  !
         PheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***GlyThr
 53156 : TTCAATACGTTCCGGGGCAGGGCCGTGCTGATTGAGAATGTGGCTTCACTCTGAGGCACA : 53097

    76 : AlaAlaGln<->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyVal :    94
         .!!.!!!:!   !:! !!:!!||||||! !||||||   ...!!!   !..    !!:!!
         ThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArg---ArgLeu
 53096 : ACCACCCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCCAGG---CGCCTG : 53040

    95 : IleValLeuAlaPheProCysAsnGlnPheGlyLysGln  >>>> Target Intron  :   108
         :!:||||||!.!||||||||||||||||||||| ! |||           2660 bp   
         ValValLeuGlyPheProCysAsnGlnPheGlyHisGln++                   
 53039 : GTGGTCCTTGGCTTCCCCTGCAACCAATTTGGACATCAGgt................... : 52996

   109 : 1 >>>>  GluProGlyThrAsnSerGluIleLeuLeuGlyLeuLysTyrValCysProG :   125
                 |||  ! !!  !|||..!|||||||||  !.!!|||||||||||| !!||||
               ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgProG
 52995 : ......agGAGAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAGTATGTCCGTCCTG : 50287

   126 : lySerGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysG :   145
         ||.!!|||!:!  !|||!!!|||   ||| !!:!!||| !!!!:|||||||||:!!!!.|
         lyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnAsnG
 50286 : GGGGTGGATACCAGCCCACCTTCACCCTTGTCCAAAAATGTGAGGTGAATGGGCAGAACG : 50227

   146 : luGlnLysValPheThrPheLeuLysAsnSerCysPro<->ProThrSerAsp<-><->< :   162
         ||!!.   ||||||.!!!:!||||||:!!!.!  !|||   |||  !..!|||       
         luHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProPheS
 50226 : AGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTCCCCTACCCTTATGATGACCCATTTT : 50167

   163 : ->LeuLeuGlySerSerSerGlnLeuPheTrpGluProMetLysValHisAspIleArgT :   181
           |||:!!  !..! !!!.!!  :!!.!!|||...|||:!!:::  !   |||:!:  !|
         erLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValAlaT
 50166 : CCCTCATGACCGATCCCAAGCTCATCATTTGGAGCCCTGTGCGCCGCTCAGATGTGGCCT : 50107

   182 : rpAsnPheGluLysPheLeuValGlyProAspGlyValProValMetHisTrpPheHisG :   201
         ||||||||||||||||||||:!!||||||!!:|||! !||| !!   !.!!::  !!.! 
         rpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerArgT
 50106 : GGAACTTTGAGAAGTTCCTCATAGGGCCGGAAGGAGAGCCCTTCCGACGCTACAGCCGCA : 50047

   202 : lnAlaProValSerThrValLysSerAspIleLeuGluTyrLeuLys :   216
             !|||..!! !!.!:!!:!! !!||||||  !...  !||||||
         hrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLys
 50046 : CCTTCCCAACCATCAACATTGAGCCTGACATCAAGCGCCTCCTTAAA : 50000

vulgar: SPP00000009_1.0 35 216 . GL397312.1:subseq(15866587,103211) 53211 49999 - 302 M 17 51 G 1 0 M 25 75 G 0 3 M 13 39 G 1 0 M 15 45 5 0 2 I 0 2656 3 0 2 M 50 150 G 0 3 M 4 12 G 0 9 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	gene	50000	53211	302	-	.	gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation +
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	cds	52999	53211	.	-	.	
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	exon	52999	53211	.	-	.	insertions 3 ; deletions 2
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	splice5	52997	52998	.	-	.	intron_id 1 ; splice_site "GT"
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	intron	50339	52998	.	-	.	intron_id 1
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	splice3	50339	50340	.	-	.	intron_id 0 ; splice_site "AG"
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	cds	50000	50338	.	-	.	
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	exon	50000	50338	.	-	.	insertions 12 ; deletions 0
GL397312.1:subseq(15866587,103211)	exonerate:protein2genome:local	similarity	50000	53211	302	-	.	alignment_id 1 ; Query SPP00000009_1.0 ; Align 53212 36 51 ; Align 53161 54 75 ; Align 53083 79 39 ; Align 53044 93 45 ; Align 50339 108 150 ; Align 50186 158 12 ; Align 50165 162 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis