genewise output
Score 308.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000009_1.0    1 MFQQFQASCLVLFFLVGFAQQTLKPQNRK                     
                     M + +QASCL+ ++L GF  Q+   +  K                     
                     MARLLQASCLLSLLLAGFVPQSRGQEKSK                     
GL397305.1:subs43957 agccccgttcctcccggtgccacgcgataGTGAGTG  Intron 1    
                     tcgttaccgttctttcgttcagggaaaca<0-----[44044:50002] 
                     gcgggggccgccgcgccccggcgaagggg                     


SPP00000009_1.0   30    VDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGL 
                        +DC+ G++ TIYEYGALT++GEEYI FKQ+AGK+VLFVNVA+YXGL 
                        MDCHGGMSSTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
GL397305.1:subs50000 CAGagtcggaaaaatgtggcaaggggtactactggatgctgaggattgc 
                     -0>tagaggtggctaaagctctagaaatctaaacgaattttatcgaggt 
                        gccttcgcccttgcacccttgggccccggttcaccctccgcccacg 


SPP00000009_1.0   76 AAQYP                          LNALQEELKNFGVIVLAF 
                       QY                           LNALQEEL  FG+++L F 
                     TGQYI          E:E[gaa]        LNALQEELAPFGLVILGF 
GL397305.1:subs50141 agctaGGTAAGAG  Intron 2   CAGAAcagccggcgctgcgacgt 
                     cgaat <1-----[50157:51546]-1>  tactaaatcctgttttgt 
                     acgct                          gtaagagtaattgctgct 


SPP00000009_1.0  100 PCNQFGKQEPGTNSEILLGL                          YVC 
                     PCNQFGKQEPG NSEIL  L                          YV  
                     PCNQFGKQEPGENSEILPTL           K:K[aag]       YVR 
GL397305.1:subs51603 ctactgacgcggatgaccacAAGTGAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgaacattcct  <2-----[51665:52079]-2> atg 
                     cccgtaagaaagcagctccc                          tca 


SPP00000009_1.0  124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFLK                    
                     PG GFVP+FQLFEKGDVNGEKEQK +TFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
GL397305.1:subs52090 cgggtgcatcctgagggaggagcattatca                    
                     cgggttcatattaagatagaaaaatactta                    
                     atactcttcgctgagtctagaggacctcag                    


SPP00000009_1.0  154                        NSCPPTSDLLGSSSQLFWEPMKVHDI 
                                            NSCPPTS+LLG+S +LFWEPMKVHDI 
                                            NSCPPTSELLGTSDRLFWEPMKVHDI 
GL397305.1:subs52180 GTGAGTG  Intron 4   TAGattccatgccgatgccttgcaagcga 
                     <0-----[52180:52565]-0>acgccccattgccagttgactataat 
                                            ccttccggcgtatccccgacggtccc 


SPP00000009_1.0  180 RWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ            
                     RWNFEKFLVGPDG P+M W H+  VS VK DIL Y+++            
                     RWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDILSYMRR            
GL397305.1:subs52644 ctatgatcggcggacaactcccaagaagaagacttaac            
                     ggataatttgcagccttggaagcctgatatattcatgg            
                     cgctggcgggattaccgcgccgcgccccggccgccggg            


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>GL397305.1:subseq(18711209,102757).pep
MARLLQASCLLSLLLAGFVPQSRGQEKSKMDCHGGMSSTIYEYGALTIDGEEYIPFKQYA
GKYVLFVNVASYXGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK
YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR
WNFEKFLVGPDGTPIMRWHHRTTVSNVKMDILSYMRR
//
>GL397305.1:subseq(18711209,102757).[43957:52757].sp
ATGGCCCGGCTGCTGCAGGCGTCCTGCCTGCTCTCCCTGCTCCTGGCCGGCTTCGTCCCG
CAGAGCCGGGGACAAGAGAAGTCGAAGATGGACTGCCATGGTGGCATGAGCAGCACCATT
TATGAGTACGGAGCCCTCACCATTGATGGGGAGGAGTACATCCCCTTCAAGCAGTATGCT
GGCAAATACGTCCTCTTTGTCAACGTGGCCAGCTACTGAGGCCTGACAGGCCAGTACATT
GAACTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCATTCTGGGCTTTCCC
TGCAACCAGTTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCCTTCCCACCCTCAAG
TATGTCCGACCAGGTGGAGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTC
AATGGAGAGAAAGAGCAGAAATTCTACACTTTCCTAAAGAACTCCTGTCCTCCCACCTCG
GAGCTCCTGGGTACATCTGACCGCCTCTTCTGGGAACCCATGAAGGTTCACGACATCCGC
TGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTACACCCATCATGCGCTGGCACCAC
CGGACCACGGTCAGCAACGTCAAGATGGACATCCTGTCCTACATGAGGCGG
//
GL397305.1:subseq(18711209,102757)	GeneWise	match	43957	52757	308.85	+	.	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	cds	43957	44043	0.00	+	0	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	intron	44044	50002	0.00	+	.	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	cds	50003	50156	0.00	+	0	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	intron	50157	51546	0.00	+	.	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	cds	51547	51664	0.00	+	2	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	intron	51665	52079	0.00	+	.	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	cds	52080	52179	0.00	+	1	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	intron	52180	52565	0.00	+	.	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
GL397305.1:subseq(18711209,102757)	GeneWise	cds	52566	52757	0.00	+	0	GL397305.1:subseq(18711209,102757)-genewise-prediction-1
//