Command line: [exonerate -m p2g --showtargetgff -q SPP00000009_1.0.fa -t SPP00000009_1.0.GL397269.1/GL397269.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
        Target: GL397269.1:subseq(37559097,100341) dna:supercontig supercontig:Nleu1.0:GL397269.1:1:47109586:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 305
   Query range: 60 -> 217
  Target range: 50759 -> 49999

    61 : GlyLysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeuAlaAlaGln<->Tyr :    79
         ||||||   :!!|||.!!! !|||||||||:!!  !   |||  !.!!!.!!:!   |||
         GlyLysIleLeuLeuIleGluAsnValAlaSerLeu***GlyThrThrValArgAspTyr
 50759 : GGCAAGATACTACTTATCGAGAATGTGGCGTCCCTCTGAGGCACCACGGTCCGGGACTAC : 50702

    80 : ProGluLeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValIleValLeuAlaPhe :    99
          !!:!!:!!|||! !||||||..!...|||  !  !   |||:!!:!:||||||!.!|||
         ThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPhe
 50701 : ACCCAGATGAACGAGCTGCAGCGGCGCCTCGGGCCCCGGGGCCTGGTGGTGCTCGGCTTC : 50642

   100 : ProCysAsnGlnPheGlyLysGln  >>>> Target Intron 1 >>>>  GluProG :   110
         |||||||||||||||||| ! |||            274 bp           |||  !!
         ProCysAsnGlnPheGlyHisGln++                         ++GluAsnA
 50641 : CCGTGCAACCAGTTTGGGCATCAGgt.........................agGAGAACG : 50335

   111 : lyThrAsnSerGluIleLeuLeuGlyLeuLysTyrValCysProGlySerGlyPheValP :   130
         .!! !|||..!|||||||||  !..!|||||||||||| ! ||||||.!!||||||! !|
         laLysAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluP
 50334 : CCAAGAACGAAGAGATTCTGAATTCCCTCAAGTACGTCCGACCTGGTGGTGGGTTCGAGC : 50275

   131 : roSerPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValPheT :   150
         ||!:!|||..!|||||||||||| !!!!:|||||||||! !  !! !!!.   :!!|||.
         roAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheA
 50274 : CCAACTTCATGCTCTTCGAGAAGTGCGAGGTGAACGGTGCGGGGGCGCACCCTCTCTTCG : 50215

   151 : hrPheLeuLysAsnSerCysProProThrSerAsp<-><-><-><->LeuLeuGlySerS :   166
         !!||||||::!.!.:!!   ||| !! !!||||||            |||:!!  !..! 
         laPheLeuArgGluAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspP
 50214 : CCTTCCTGCGGGAGGCCCTGCCAGCCCCCAGCGACGACGCCACTGCACTTATGACCGACC : 50155

   167 : erSerGlnLeuPheTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysP :   186
         !!!.!!  :!!  !|||...|||:!!     !:!!|||:!!  !||||||||||||||||
         roLysLeuIleThrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysP
 50154 : CCAAGCTCATCACCTGGTCTCCGGTGTGTCGCAACGATGTTGCCTGGAACTTTGAGAAGT : 50095

   187 : heLeuValGlyProAspGlyValProValMetHisTrpPheHisGlnAlaProValSerT :   206
         ||||||||||||||||||||||||||:!!   ...!::  !!.!!::  !! !..!! ! 
         heLeuValGlyProAspGlyValProLeuArgArgTyrSerArgArgPheGlnThrIleA
 50094 : TCCTGGTGGGCCCTGACGGTGTGCCCCTACGCAGGTACAGCCGCCGCTTCCAGACCATTG : 50035

   207 : hrValLysSerAspIleLeuGluTyrLeuLysGln :   217
          !:!!:!! !!||||||  !!     |||...|||
         spIleGluProAspIleGluAlaLeuLeuSerGln
 50034 : ACATCGAGCCTGACATCGAAGCCCTGCTCTCTCAA : 50000

vulgar: SPP00000009_1.0 60 217 . GL397269.1:subseq(37559097,100341) 50759 49999 - 305 M 18 54 G 0 3 M 29 87 5 0 2 I 0 270 3 0 2 M 54 162 G 0 12 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	gene	50000	50759	305	-	.	gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation +
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	cds	50616	50759	.	-	.	
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	exon	50616	50759	.	-	.	insertions 3 ; deletions 0
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	splice5	50614	50615	.	-	.	intron_id 1 ; splice_site "GT"
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	intron	50342	50615	.	-	.	intron_id 1
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	splice3	50342	50343	.	-	.	intron_id 0 ; splice_site "AG"
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	cds	50000	50341	.	-	.	
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	exon	50000	50341	.	-	.	insertions 12 ; deletions 0
GL397269.1:subseq(37559097,100341)	exonerate:protein2genome:local	similarity	50000	50759	305	-	.	alignment_id 1 ; Query SPP00000009_1.0 ; Align 50760 61 54 ; Align 50703 79 87 ; Align 50342 108 162 ; Align 50168 162 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis