genewise output
Score 487.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000008_1.0    1 MTTQLRVVHLLPLLLACFVQTSPKQEKMK                     
                     MTTQLRV++LLPLLLACFVQTS KQEKMK                     
                     MTTQLRVIYLLPLLLACFVQTSAKQEKMK                     
GL397342.1:subs73288 aaactagatccccccgttgcaagacgaaaGTGAGTG  Intron 1    
                     tccatgttattctttcgttacgcaaaata<0-----[73375:76647] 
                     gtagagcctgtctcacctaaatcgggggg                     


SPP00000008_1.0   30    MDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGL 
                        MDCHKDEK TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGL 
                        MDCHKDEKATIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGL 
GL397342.1:subs76645 CAGagtcaggagaatgtggagcaaagtgttactggacactgaggattgc 
                     -0>tagaaaaacctaaaactctaaaaatctaaatgaattttatccaggt 
                        gtccatgaccctctgccattgtattccggtgcgcctcccgcccttg 


SPP00000008_1.0   76 TAQYP                          LNALQEELKPYGLVVLGF 
                     TAQYP                          LNALQEELKPYGLVVLGF 
                     TAQYP          E:E[gaa]        LNALQEELKPYGLVVLGF 
GL397342.1:subs76786 agctcGGTAAGAG  Intron 2   CAGAAcagccggcactgcggcgt 
                     ccaac <1-----[76802:79077]-1>  tactaaatacagttttgt 
                     agatt                          atacgggggcttatggct 


SPP00000008_1.0  100 PCNQFGKQEPGDNKEILPGL                          YVR 
                     PCNQFGKQEPGDNKEILPGL                          YVR 
                     PCNQFGKQEPGDNKEILPGL           K:K[aag]       YVR 
GL397342.1:subs79134 ctactgacgcggaagaccgcAAGTAAGTG  Intron 3   TAGGtgc 
                     cgaatgaaacgaaaattcgt  <2-----[79196:79622]-2> atg 
                     cccatagaaaatcagtttgc                          tct 


SPP00000008_1.0  124 PGGGFVPSFQLFEKGDVNGEKEQKVFSFLK                    
                     PGGGFVP+FQLFEKGDVNGEKEQKVFSFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKVFSFLK                    
GL397342.1:subs79633 cgggtgcatcctgagggaggagcagtatta                    
                     cgggttcatattaagatagaaaaattgtta                    
                     agaatattcgttgattgttaaagaccccgg                    


SPP00000008_1.0  154                        HSCPHPSEILGTFKSISWDPVKVHDI 
                                            HSCPHPSEILGTFKSISWDPVKVHDI 
                                            HSCPHPSEILGTFKSISWDPVKVHDI 
GL397342.1:subs79723 GTGAGTA  Intron 4   TAGcttccctgatgatatattgcgagcga 
                     <0-----[79723:81265]-0>acgcaccattgctactcgactataat 
                                            cctttctgtgcacatacgctagctcc 


SPP00000008_1.0  180 RWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK        
                     RWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK        
                     RWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK        
GL397342.1:subs81344 ctatgatcggcggacgacttccgagatgaagacgttactaaa        
                     ggataatttgcagtcttggcagcctgctacattcataataca        
                     tgctagcgggttactcgcgccgtgccaggaccggcggacaca        


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>GL397342.1:subseq(5664884,131469).pep
MTTQLRVIYLLPLLLACFVQTSAKQEKMKMDCHKDEKATIYDYEAIALNKNEYVSFKQYV
GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
YVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR
WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
//
>GL397342.1:subseq(5664884,131469).[73288:81469].sp
ATGACTACACAGTTAAGGGTCATCTATCTGCTTCCCCTTCTCCTAGCCTGCTTTGTACAA
ACAAGTGCCAAGCAGGAGAAGATGAAGATGGATTGCCACAAAGATGAGAAAGCCACCATC
TATGACTATGAGGCCATCGCACTTAATAAGAATGAATATGTTTCCTTCAAGCAGTATGTG
GGCAAGCACATCCTTTTCGTCAACGTGGCCACCTACTGTGGTCTGACAGCGCAATATCCT
GAACTAAATGCACTCCAGGAGGAGCTGAAGCCCTATGGTCTAGTTGTGCTGGGCTTTCCC
TGCAACCAATTTGGAAAGCAAGAACCAGGAGATAACAAAGAGATTCTTCCTGGGCTCAAG
TATGTCCGTCCAGGGGGAGGATTTGTACCTAATTTCCAGCTTTTTGAGAAAGGTGATGTG
AATGGTGAAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGCACTCCTGTCCTCATCCCTCT
GAGATTTTGGGCACATTCAAATCTATATCCTGGGACCCTGTAAAGGTCCATGACATCCGT
TGGAACTTTGAAAAGTTCCTGGTGGGGCCTGATGGAATCCCTGTCATGCGCTGGTCCCAC
CGGGCTACGGTCAGCTCAGTGAAGACAGACATCCTGGCGTACTTGAAGCAATTCAAAACC
AAA
//
GL397342.1:subseq(5664884,131469)	GeneWise	match	73288	81469	487.61	+	.	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	cds	73288	73374	0.00	+	0	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	intron	73375	76647	0.00	+	.	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	cds	76648	76801	0.00	+	0	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	intron	76802	79077	0.00	+	.	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	cds	79078	79195	0.00	+	2	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	intron	79196	79622	0.00	+	.	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	cds	79623	79722	0.00	+	1	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	intron	79723	81265	0.00	+	.	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
GL397342.1:subseq(5664884,131469)	GeneWise	cds	81266	81469	0.00	+	0	GL397342.1:subseq(5664884,131469)-genewise-prediction-1
//