Command line: [exonerate -m p2g --showtargetgff -q SPP00000008_1.0.fa -t SPP00000008_1.0.GL397312.1/GL397312.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000008_1.0 # Protein # Glutathione peroxidase 5 (GPx5) # Homo sapiens # Complete
        Target: GL397312.1:subseq(15866587,103202) dna:supercontig supercontig:Nleu1.0:GL397312.1:1:16802348:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 342
   Query range: 38 -> 216
  Target range: 53202 -> 49999

    39 : ThrIleTyrAspTyrGluAlaIleAlaLeuAsnLysAsnGluTyrValSerPheLysGln :    58
         :!!.!!||||||  !...||||||::!|||:!!   ...||| ! |||..!|||!!.  !
         SerPheTyrAspLeuSerAlaIleSerLeuAsp---GlyGluLysValAspPheAsnThr
 53202 : TCCTTCTATGACCTCAGTGCAATCAGCCTGGAT---GGGGAGAAGGTAGATTTCAATACG : 53148

    59 : TyrValGlyLysHisIleLeuPheValAsnValAlaThrTyrCysGlyLeuThrAlaGln :    78
         !:!  !|||!:!  !:!:|||.!!! !|||||||||:!!  !!! |||  !|||.!!!:!
         PheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***GlyThrThrThrArg
 53147 : TTCCGGGGCAGGGCCGTGCTGATTGAGAATGTGGCTTCACTCTGAGGCACAACCACCCGG : 53088

    79 : <->TyrProGluLeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLeuValValLeu :    97
            !:! !!:!!||||||! !||||||   ...!!!   |||    !!||||||||||||
         AspPheThrGlnLeuAsnGluLeuGlnCysArgPhe---ProArgArgLeuValValLeu
 53087 : GACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTT---CCCAGGCGCCTGGTGGTCCTT : 53031

    98 : GlyPheProCysAsnGlnPheGlyLysGln  >>>> Target Intron 1 >>>>  G :   108
         |||||||||||||||||||||||| ! |||           2660 bp           |
         GlyPheProCysAsnGlnPheGlyHisGln++                         ++G
 53030 : GGCTTCCCCTGCAACCAATTTGGACATCAGgt.........................agG : 50338

   109 : luProGlyAspAsnLysGluIleLeuProGlyLeuLysTyrValArgProGlyGlyGlyP :   128
         ||  ! !!.!.|||:!!|||||||||  !.!!|||||||||||||||||||||||||||!
         luAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyT
 50337 : AGAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAGTATGTCCGTCCTGGGGGTGGAT : 50278

   129 : heValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysV :   148
         :!  !|||!!!|||   ||| !!:!!||| !!!!:|||||||||:!!!!.|||!!.   |
         yrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnAsnGluHisProV
 50277 : ACCAGCCCACCTTCACCCTTGTCCAAAAATGTGAGGTGAATGGGCAGAACGAGCATCCTG : 50218

   149 : alPheSerPheLeuLysHisSerCysProHisProSerGlu<-><-><-><->IleLeuG :   164
         |||||:!!!:!|||||| !!!.!  !|||:!!|||! !!!:            :!!:!! 
         alPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProPheSerLeuMetT
 50217 : TCTTCGCCTACCTGAAGGACAAGCTCCCCTACCCTTATGATGACCCATTTTCCCTCATGA : 50158

   165 : lyThrPheLysSerIleSerTrpAspProValLysValHisAspIleArgTrpAsnPheG :   184
          !  !  !|||  !|||! !|||..!||||||:::  !   |||:!:  !||||||||||
         hrAspProLysLeuIleIleTrpSerProValArgArgSerAspValAlaTrpAsnPheG
 50157 : CCGATCCCAAGCTCATCATTTGGAGCCCTGTGCGCCGCTCAGATGTGGCCTGGAACTTTG : 50098

   185 : luLysPheLeuValGlyProAspGlyIleProValMetArgTrpSerHisArgAlaThrV :   204
         |||||||||||:!!||||||!!:|||   ||| !!   |||!::|||!.!! !  ! !!.
         luLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerArgThrPheProT
 50097 : AGAAGTTCCTCATAGGGCCGGAAGGAGAGCCCTTCCGACGCTACAGCCGCACCTTCCCAA : 50038

   205 : alSerSerValLysThrAspIleLeuAlaTyrLeuLys :   216
         .!! !!:!:!!:!! !!||||||  !  !  !||||||
         hrIleAsnIleGluProAspIleLysArgLeuLeuLys
 50037 : CCATCAACATTGAGCCTGACATCAAGCGCCTCCTTAAA : 50000

vulgar: SPP00000008_1.0 38 216 . GL397312.1:subseq(15866587,103202) 53202 49999 - 342 M 11 33 G 1 0 M 28 84 G 0 3 M 11 33 G 1 0 M 17 51 5 0 2 I 0 2656 3 0 2 M 54 162 G 0 12 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-30
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	gene	50000	53202	342	-	.	gene_id 1 ; sequence SPP00000008_1.0 ; gene_orientation +
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	cds	52999	53202	.	-	.	
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	exon	52999	53202	.	-	.	insertions 3 ; deletions 2
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	splice5	52997	52998	.	-	.	intron_id 1 ; splice_site "GT"
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	intron	50339	52998	.	-	.	intron_id 1
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	splice3	50339	50340	.	-	.	intron_id 0 ; splice_site "AG"
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	cds	50000	50338	.	-	.	
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	exon	50000	50338	.	-	.	insertions 12 ; deletions 0
GL397312.1:subseq(15866587,103202)	exonerate:protein2genome:local	similarity	50000	53202	342	-	.	alignment_id 1 ; Query SPP00000008_1.0 ; Align 53203 39 33 ; Align 53170 51 84 ; Align 53083 79 33 ; Align 53050 91 51 ; Align 50339 108 162 ; Align 50165 162 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis