genewise output
Score 368.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000007_1.0    1 MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     MSLGRLCRLLKPALLCGALAAPGLAGTM                      
GL397406.1:subs48616 aacgcctcccacgcctggcggcgcggaaGTGAGCG  Intron 1     
                     tgtggtggttaccttggctcccgtcgct<0-----[48700:49999]  
                     gcccctccgagggactgtgcgacgcgcg                      


SPP00000007_1.0   29    CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCARSMHEFSAKDIDGH VNLDKY                
                        CASRDDWRCARSMHEFSAKDIDGHTVNLDKY                
GL397406.1:subs49997 CAGtgtcggtctgctacgttgagaggcagacgat                
                     -0>gccgaagggcgctaatccaatagactataaa                
                        cgcgccgctgccgcgtccgcccgcgtcgcgc                


SPP00000007_1.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCIVTNVASQXGKTEVNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTEVNYTQL 
GL397406.1:subs50093 CGGTAGGCG  Intron 2   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[50095:50175]-2> gttgttcatccaggacataacat 
                                               ccgccccccccgacgcagcctgc 


SPP00000007_1.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
GL397406.1:subs50246 ggccgctggtgtcacgtctactgacGTGGGCG  Intron 3   CAGg 
                     tatacgacaggtgttctcgaatgaa<0-----[50321:50465]-0>a 
                     ccgccactgttggcgccttcgcggg                       g 


SPP00000007_1.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
GL397406.1:subs50469 cgaaggaagtgggtagatgataaatgaggggccctataaaccagagacg 
                     cggaaataatccgaatatattgatgtagaacactgagtatacagagttg 
                     agtcagcagccgccccactgccgccgcgccccgggggggcaagcgccga 


SPP00000007_1.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
GL397406.1:subs50616 AAGTGCGTG  Intron 4   CAGTgaatataa                
                       <2-----[50618:51031]-2> ctagatca                
                                               ccggcccg                


SPP00000007_1.0  168                        FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEPL       
GL397406.1:subs51057 GTAAGGG  Intron 5   CAGtcagaagtggactgcaggcc       
                     <0-----[51057:51200]-0>tttaaaggttagagctaact       
                                            cctcgcccgggtcacggacg       


SPP00000007_1.0  188                        VIEKDLPHYF                 
                                            VIEKDLPHYF                 
                                            VIEKDLPHYF                 
GL397406.1:subs51261 GTAGGTG  Intron 6   CAGgagagccctt                 
                     <0-----[51261:51338]-0>ttaaatcaat                 
                                            gaggcgcctc                 


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>GL397406.1:subseq(810506,101368).pep
MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHTVNLDKYR
GFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA
AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY
GPMEEPLVIEKDLPHYF
//
>GL397406.1:subseq(810506,101368).[48616:51368].sp
ATGAGCCTCGGCCGCCTTTGCCGCCTGCTAAAGCCGGCGCTACTCTGTGGGGCTCTGGCC
GCGCCAGGCCTGGCCGGGACCATGTGCGCGTCCCGGGACGACTGGCGCTGTGCGCGCTCC
ATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACACGGTTAACCTGGACAAGTACCGG
GGCTTCGTGTGCATCGTCACCAACGTCGCCTCCCAGTGAGGCAAGACCGAAGTGAACTAC
ACTCAGCTCGTCGACCTGCACGCCCGATACGCTGAGTGTGGTTTGCGGATCCTGGCCTTC
CCTTGTAACCAGTTCGGGAAGCAGGAGCCAGGGAGTAACGAAGAGATCAAAGAGTTCGCC
GCGGGCTACAACGTCAAATTCGATATGTTCAGCAAGATCTGCGTGAACGGGGACGACGCC
CACCCGCTGTGGAAGTGGATGAAGATCCAACCAAAGGGCAAGGGCATCCTGGGAAATGCC
ATCAAGTGGAACTTCACCAAGTTCCTCATTGACAAGAACGGCTGCGTGGTGAAGCGTTAC
GGACCCATGGAGGAACCCCTGGTGATAGAGAAGGACCTGCCCCACTATTTC
//
GL397406.1:subseq(810506,101368)	GeneWise	match	48616	51368	368.23	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	48616	48699	0.00	+	0	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	intron	48700	49999	0.00	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	50000	50094	0.00	+	0	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	intron	50095	50175	0.00	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	50176	50320	0.00	+	1	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	intron	50321	50465	0.00	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	50466	50617	0.00	+	0	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	intron	50618	51031	0.00	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	51032	51056	0.00	+	1	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	intron	51057	51200	0.00	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	51201	51260	0.00	+	0	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	intron	51261	51338	0.00	+	.	GL397406.1:subseq(810506,101368)-genewise-prediction-1
GL397406.1:subseq(810506,101368)	GeneWise	cds	51339	51368	0.00	+	0	GL397406.1:subseq(810506,101368)-genewise-prediction-1
//