Command line: [exonerate -m p2g --showtargetgff -q SPP00000007_1.0.fa -t SPP00000007_1.0.GL397269.1/GL397269.1.subseq] Hostname: [upf-OptiPlex-755] C4 Alignment: ------------ Query: SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete Target: GL397269.1:subseq(37559713,100146) dna:supercontig supercontig:Nleu1.0:GL397269.1:1:47109586:1 REF:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 59 -> 108 Target range: 50146 -> 49999 60 : ArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThrGluValAsn : 79 |||||| :!! :!!:!! !||||||||||||! |||! |||! !:!! ArgGlyLysIleLeuLeuIleGluAsnValAlaSerLeu***GlyThrThrValArgAsp 50146 : CGGGGCAAGATACTACTTATCGAGAATGTGGCGTCCCTCTGAGGCACCACGGTCCGGGAC : 50089 80 : TyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAla : 99 |||||||||:!! !!!:|||!!. !||| !!.! ! |||||| !:!:|||!.! TyrThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGly 50088 : TACACCCAGATGAACGAGCTGCAGCGGCGCCTCGGGCCCCGGGGCCTGGTGGTGCTCGGC : 50029 100 : PheProCysAsnGlnPheGlyLysGln : 108 ||||||||||||||||||||| ! ||| PheProCysAsnGlnPheGlyHisGln 50028 : TTCCCGTGCAACCAGTTTGGGCATCAG : 50000 vulgar: SPP00000007_1.0 59 108 . GL397269.1:subseq(37559713,100146) 50146 49999 - 116 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2012-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # GL397269.1:subseq(37559713,100146) exonerate:protein2genome:local gene 50000 50146 116 - . gene_id 1 ; sequence SPP00000007_1.0 ; gene_orientation . GL397269.1:subseq(37559713,100146) exonerate:protein2genome:local cds 50000 50146 . - . GL397269.1:subseq(37559713,100146) exonerate:protein2genome:local exon 50000 50146 . - . insertions 0 ; deletions 0 GL397269.1:subseq(37559713,100146) exonerate:protein2genome:local similarity 50000 50146 116 - . alignment_id 1 ; Query SPP00000007_1.0 ; Align 50147 60 147 # --- END OF GFF DUMP --- # -- completed exonerate analysis