genewise output
Score 478.78 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000006_1.0    1 MARLLQASCLLSLLLAGFVSQSRGQEKSK                     
                     MARLLQASCLLSLLLAGFV QSRGQEKSK                     
                     MARLLQASCLLSLLLAGFVPQSRGQEKSK                     
GL397305.1:subs43957 agccccgttcctcccggtgccacgcgataGTGAGTG  Intron 1    
                     tcgttaccgttctttcgttcagggaaaca<0-----[44044:50002] 
                     gcgggggccgccgcgccccggcgaagggg                     


SPP00000006_1.0   30    MDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
                        MDCHGG+S TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
                        MDCHGGMSSTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
GL397305.1:subs50000 CAGagtcggaaaaatgtggcaaggggtactactggatgctgaggattgc 
                     -0>tagaggtggctaaagctctagaaatctaaacgaattttatcgaggt 
                        gccttcgcccttgcacccttgggccccggttcaccctccgcccacg 


SPP00000006_1.0   76 TGQYI                          LNALQEELAPFGLVILGF 
                     TGQYI                          LNALQEELAPFGLVILGF 
                     TGQYI          E:E[gaa]        LNALQEELAPFGLVILGF 
GL397305.1:subs50141 agctaGGTAAGAG  Intron 2   CAGAAcagccggcgctgcgacgt 
                     cgaat <1-----[50157:51546]-1>  tactaaatcctgttttgt 
                     acgct                          gtaagagtaattgctgct 


SPP00000006_1.0  100 PCNQFGKQEPGENSEILPTL                          YVR 
                     PCNQFGKQEPGENSEILPTL                          YVR 
                     PCNQFGKQEPGENSEILPTL           K:K[aag]       YVR 
GL397305.1:subs51603 ctactgacgcggatgaccacAAGTGAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgaacattcct  <2-----[51665:52079]-2> atg 
                     cccgtaagaaagcagctccc                          tca 


SPP00000006_1.0  124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
GL397305.1:subs52090 cgggtgcatcctgagggaggagcattatca                    
                     cgggttcatattaagatagaaaaatactta                    
                     atactcttcgctgagtctagaggacctcag                    


SPP00000006_1.0  154                        NSCPPTSELLGTSDRLFWEPMKVHDI 
                                            NSCPPTSELLGTSDRLFWEPMKVHDI 
                                            NSCPPTSELLGTSDRLFWEPMKVHDI 
GL397305.1:subs52180 GTGAGTG  Intron 4   TAGattccatgccgatgccttgcaagcga 
                     <0-----[52180:52565]-0>acgccccattgccagttgactataat 
                                            ccttccggcgtatccccgacggtccc 


SPP00000006_1.0  180 RWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK   
                     RWNFEKFLVGPDG PIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK   
                     RWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK   
GL397305.1:subs52644 ctatgatcggcggacaactcccaagaagaagacttaaccggcggaaa   
                     ggataatttgcagccttggaagcctgatatattcatggacctgtaga   
                     cgctggcgggattaccgcgccgcgccccggccgccggggacggcggg   


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>GL397305.1:subseq(18711209,102784).pep
MARLLQASCLLSLLLAGFVPQSRGQEKSKMDCHGGMSSTIYEYGALTIDGEEYIPFKQYA
GKYVLFVNVASYXGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK
YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR
WNFEKFLVGPDGTPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK
//
>GL397305.1:subseq(18711209,102784).[43957:52784].sp
ATGGCCCGGCTGCTGCAGGCGTCCTGCCTGCTCTCCCTGCTCCTGGCCGGCTTCGTCCCG
CAGAGCCGGGGACAAGAGAAGTCGAAGATGGACTGCCATGGTGGCATGAGCAGCACCATT
TATGAGTACGGAGCCCTCACCATTGATGGGGAGGAGTACATCCCCTTCAAGCAGTATGCT
GGCAAATACGTCCTCTTTGTCAACGTGGCCAGCTACTGAGGCCTGACAGGCCAGTACATT
GAACTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCATTCTGGGCTTTCCC
TGCAACCAGTTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCCTTCCCACCCTCAAG
TATGTCCGACCAGGTGGAGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTC
AATGGAGAGAAAGAGCAGAAATTCTACACTTTCCTAAAGAACTCCTGTCCTCCCACCTCG
GAGCTCCTGGGTACATCTGACCGCCTCTTCTGGGAACCCATGAAGGTTCACGACATCCGC
TGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTACACCCATCATGCGCTGGCACCAC
CGGACCACGGTCAGCAACGTCAAGATGGACATCCTGTCCTACATGAGGCGGCAGGCAGCC
CTGGGGGTCAAGAGGAAG
//
GL397305.1:subseq(18711209,102784)	GeneWise	match	43957	52784	478.78	+	.	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	cds	43957	44043	0.00	+	0	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	intron	44044	50002	0.00	+	.	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	cds	50003	50156	0.00	+	0	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	intron	50157	51546	0.00	+	.	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	cds	51547	51664	0.00	+	2	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	intron	51665	52079	0.00	+	.	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	cds	52080	52179	0.00	+	1	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	intron	52180	52565	0.00	+	.	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
GL397305.1:subseq(18711209,102784)	GeneWise	cds	52566	52784	0.00	+	0	GL397305.1:subseq(18711209,102784)-genewise-prediction-1
//