genewise output
Score 106.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000005_1.0   49 QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSL           
                     +LN LQ  + P  LV+LGFPCNQFG QE  +N EIL +L           
                     ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL           
GL397305.1:subs48935 gcagccggcgctgcgacgtctactgacgcggatgaccac           
                     atactaaatcctgttttgtcgaatgaaacgaacattcct           
                     agtaagagtaattgctgctcccgtaagaaagcagctccc           


SPP00000005_1.0   87                           YVRPGGGYQPTFTLVQKCEVNGQ 
                                               YVRPGGG+ P F L +K +VNG+ 
                                K:K[aag]       YVRPGGGFVPNFQLFEKGDVNGE 
GL397305.1:subs49052 AAGTGAGTG  Intron 1   CAGGtgccgggtgcatcctgagggagg 
                       <2-----[49054:49468]-2> atgcgggttcatattaagataga 
                                               tcaatactcttcgctgagtctag 


SPP00000005_1.0  111 NEHPVFAYLK                       DKLPYPYDDPFSLMTD 
                      E   + +LK                       +  P P  +   L+   
                     KEQKFYTFLK                       NSCP-PTSE---LLGT 
GL397305.1:subs49539 agcattatcaGTGAGTG  Intron 2   TAGattc catg   ccga 
                     aaaatactta<0-----[49569:49954]-0>acgc ccca   ttgc 
                     aggacctcag                       cctt ccgg   cgta 


SPP00000005_1.0  137 PKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI    
                        ++W P++  D+ WNFEKFL+GP+G P+ R+       N++ DI    
                     SDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDI    
GL397305.1:subs49991 tgccttgcaagcgactatgatcggcggacaactcccaagaagaaga    
                     cagttgactataatggataatttgcagccttggaagcctgatatat    
                     tccccgacggtccccgctggcgggattaccgcgccgcgccccggcc    


//
Making a K in phase 2 intron
>GL397305.1:subseq(18713820,100128).pep
ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDV
NGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHH
RTTVSNVKMDI
//
>GL397305.1:subseq(18713820,100128).[48935:50128].sp
GAACTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCATTCTGGGCTTTCCC
TGCAACCAGTTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCCTTCCCACCCTCAAG
TATGTCCGACCAGGTGGAGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTC
AATGGAGAGAAAGAGCAGAAATTCTACACTTTCCTAAAGAACTCCTGTCCTCCCACCTCG
GAGCTCCTGGGTACATCTGACCGCCTCTTCTGGGAACCCATGAAGGTTCACGACATCCGC
TGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTACACCCATCATGCGCTGGCACCAC
CGGACCACGGTCAGCAACGTCAAGATGGACATC
//
GL397305.1:subseq(18713820,100128)	GeneWise	match	48935	50128	108.63	+	.	GL397305.1:subseq(18713820,100128)-genewise-prediction-1
GL397305.1:subseq(18713820,100128)	GeneWise	cds	48935	49053	0.00	+	0	GL397305.1:subseq(18713820,100128)-genewise-prediction-1
GL397305.1:subseq(18713820,100128)	GeneWise	intron	49054	49468	0.00	+	.	GL397305.1:subseq(18713820,100128)-genewise-prediction-1
GL397305.1:subseq(18713820,100128)	GeneWise	cds	49469	49568	0.00	+	1	GL397305.1:subseq(18713820,100128)-genewise-prediction-1
GL397305.1:subseq(18713820,100128)	GeneWise	intron	49569	49954	0.00	+	.	GL397305.1:subseq(18713820,100128)-genewise-prediction-1
GL397305.1:subseq(18713820,100128)	GeneWise	cds	49955	50128	0.00	+	0	GL397305.1:subseq(18713820,100128)-genewise-prediction-1
//