Command line: [exonerate -m p2g --showtargetgff -q SPP00000005_1.0.fa -t SPP00000005_1.0.GL397269.1/GL397269.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete
        Target: GL397269.1:subseq(37559103,100756) dna:supercontig supercontig:Nleu1.0:GL397269.1:1:47109586:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 615
   Query range: 25 -> 186
  Target range: 50759 -> 49999

    26 : PheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrThrArg :    45
         .!.||||||!:!  !:!!||||||||||||||||||||||||   |||||||||..!|||
         LeuArgGlyLysIleLeuLeuIleGluAsnValAlaSerLeu***GlyThrThrValArg
 50759 : CTGCGGGGCAAGATACTACTTATCGAGAATGTGGCGTCCCTCTGAGGCACCACGGTCCGG : 50702

    46 : AspPheThrGlnLeuAsnGluLeuGlnCysArgPhe<->ProArgArgLeuValValLeu :    64
         |||!:!||||||:!!|||||||||||| ! |||.!!   |||||| !!||||||||||||
         AspTyrThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeu
 50701 : GACTACACCCAGATGAACGAGCTGCAGCGGCGCCTCGGGCCCCGGGGCCTGGTGGTGCTC : 50642

    65 : GlyPheProCysAsnGlnPheGlyHisGln  >>>> Target Intron 1 >>>>  G :    75
         ||||||||||||||||||||||||||||||            274 bp           |
         GlyPheProCysAsnGlnPheGlyHisGln++                         ++G
 50641 : GGCTTCCCGTGCAACCAGTTTGGGCATCAGgt.........................agG : 50335

    76 : luAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyT :    95
         |||||..!:!!||||||||||||||||||||||||||||||||||||||||||||||||!
         luAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyP
 50334 : AGAACGCCAAGAACGAAGAGATTCTGAATTCCCTCAAGTACGTCCGACCTGGTGGTGGGT : 50275

    96 : yrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnAsnGluHisProV :   115
         :!:!!|||!.!|||! !||| !!:!!||||||||||||||||||  !...! !||||||:
         heGluProAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProL
 50274 : TCGAGCCCAACTTCATGCTCTTCGAGAAGTGCGAGGTGAACGGTGCGGGGGCGCACCCTC : 50215

   116 : alPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProPheSerLeuMetT :   135
         !!||||||!:!|||::!!!:   ||||||  !|||  !|||||| !!  !:!!|||||||
         euPheAlaPheLeuArgGluAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetT
 50214 : TCTTCGCCTTCCTGCGGGAGGCCCTGCCAGCCCCCAGCGACGACGCCACTGCACTTATGA : 50155

   136 : hrAspProLysLeuIleIleTrpSerProValArgArgSerAspValAlaTrpAsnPheG :   155
         |||||||||||||||||! !|||||||||||| !!|||!:!|||||||||||||||||||
         hrAspProLysLeuIleThrTrpSerProValCysArgAsnAspValAlaTrpAsnPheG
 50154 : CCGACCCCAAGCTCATCACCTGGTCTCCGGTGTGTCGCAACGATGTTGCCTGGAACTTTG : 50095

   156 : luLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerArgThrPheProT :   175
         |||||||||||:!:||||||!!:|||! !|||.!.|||||||||||||||  !|||! !|
         luLysPheLeuValGlyProAspGlyValProLeuArgArgTyrSerArgArgPheGlnT
 50094 : AGAAGTTCCTGGTGGGCCCTGACGGTGTGCCCCTACGCAGGTACAGCCGCCGCTTCCAGA : 50035

   176 : hrIleAsnIleGluProAspIleLysArgLeuLeu :   186
         |||||:!!|||||||||||||||:!!  !||||||
         hrIleAspIleGluProAspIleGluAlaLeuLeu
 50034 : CCATTGACATCGAGCCTGACATCGAAGCCCTGCTC : 50000

vulgar: SPP00000005_1.0 25 186 . GL397269.1:subseq(37559103,100756) 50759 49999 - 615 M 32 96 G 0 3 M 17 51 5 0 2 I 0 270 3 0 2 M 112 336
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	gene	50000	50759	615	-	.	gene_id 1 ; sequence SPP00000005_1.0 ; gene_orientation +
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	cds	50610	50759	.	-	.	
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	exon	50610	50759	.	-	.	insertions 3 ; deletions 0
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	splice5	50608	50609	.	-	.	intron_id 1 ; splice_site "GT"
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	intron	50336	50609	.	-	.	intron_id 1
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	splice3	50336	50337	.	-	.	intron_id 0 ; splice_site "AG"
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	cds	50000	50335	.	-	.	
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	exon	50000	50335	.	-	.	insertions 0 ; deletions 0
GL397269.1:subseq(37559103,100756)	exonerate:protein2genome:local	similarity	50000	50759	615	-	.	alignment_id 1 ; Query SPP00000005_1.0 ; Align 50760 26 96 ; Align 50661 58 51 ; Align 50336 75 336
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis