genewise output
Score 149.24 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000004_1.0   15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYT       
                     ++Y + A  L   E VS     GK +L+ NVA+  G T + Y        
                     TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YP       
GL397342.1:subs76666 aatgtggagcaaagtgttactggacactgaggattgcagc tc       
                     ctaaaactctaaaaatctaaatgaattttatccaggtcca ac       
                     cctctgccattgtattccggtgcgcctcccgcccttgaga tt       


SPP00000004_1.0   58                           MNELQRRLGPRGLVVLGFPCNQF 
                                               +N LQ  L P GLVVLGFPCNQF 
                               Q:E[gaa]        LNALQEELKPYGLVVLGFPCNQF 
GL397342.1:subs76792 GGTAAGAG  Intron 1   CAGAAcagccggcactgcggcgtctact 
                      <1-----[76793:79068]-1>  tactaaatacagttttgtcgaat 
                                               atacgggggcttatggctcccat 


SPP00000004_1.0   82 GHQENAKNEEILNSL                          YVRPGGGF 
                     G QE   N+EIL  L                          YVRPGGGF 
                     GKQEPGDNKEILPGL           K:K[aag]       YVRPGGGF 
GL397342.1:subs79140 gacgcggaagaccgcAAGTAAGTG  Intron 2   TAGGtgccgggt 
                     gaaacgaaaattcgt  <2-----[79187:79613]-2> atgcgggt 
                     agaaaatcagtttgc                          tctagaat 


SPP00000004_1.0  106 EPNFMLFEKCEVNGAGAHPLFAFLR                       E 
                      PNF+LFEK +VNG     +F+FL+                         
                     VPNFQLFEKGDVNGEKEQKVFSFLK                       H 
GL397342.1:subs79639 gcatcctgagggaggagcagtattaGTGAGTA  Intron 3   TAGc 
                     tcatattaagatagaaaaattgtta<0-----[79714:81256]-0>a 
                     attcgttgattgttaaagaccccgg                       c 


SPP00000004_1.0  132 ALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 
                     + P PS+    ++   K I+W PV  +D+ WNFEKFLVGPDG+P+ R+S 
                     SCPHPSE----ILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWS 
GL397342.1:subs81260 ttccctg    atgatatattgcgagcgactatgatcggcggacgactt 
                     cgcacca    ttgctactcgactataatggataatttgcagtcttggc 
                     ctttctg    tgcacatacgctagctcctgctagcgggttactcgcgc 


SPP00000004_1.0  181 RRFQTIDIEPDIEALLSQ                                
                      R     ++ DI A L Q                                
                     HRATVSSVKTDILAYLKQ                                
GL397342.1:subs81395 ccgagatgaagacgttac                                
                     agcctgctacattcataa                                
                     cgtgccaggaccggcgga                                


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>GL397342.1:subseq(5664893,131448).pep
TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLG
FPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPH
PSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ
//
>GL397342.1:subseq(5664893,131448).[76666:81448].sp
ACCATCTATGACTATGAGGCCATCGCACTTAATAAGAATGAATATGTTTCCTTCAAGCAG
TATGTGGGCAAGCACATCCTTTTCGTCAACGTGGCCACCTACTGTGGTCTGACAGCGCAA
TATCCTGAACTAAATGCACTCCAGGAGGAGCTGAAGCCCTATGGTCTAGTTGTGCTGGGC
TTTCCCTGCAACCAATTTGGAAAGCAAGAACCAGGAGATAACAAAGAGATTCTTCCTGGG
CTCAAGTATGTCCGTCCAGGGGGAGGATTTGTACCTAATTTCCAGCTTTTTGAGAAAGGT
GATGTGAATGGTGAAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGCACTCCTGTCCTCAT
CCCTCTGAGATTTTGGGCACATTCAAATCTATATCCTGGGACCCTGTAAAGGTCCATGAC
ATCCGTTGGAACTTTGAAAAGTTCCTGGTGGGGCCTGATGGAATCCCTGTCATGCGCTGG
TCCCACCGGGCTACGGTCAGCTCAGTGAAGACAGACATCCTGGCGTACTTGAAGCAA
//
GL397342.1:subseq(5664893,131448)	GeneWise	match	76666	81448	152.23	+	.	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	cds	76666	76792	0.00	+	0	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	intron	76793	79068	0.00	+	.	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	cds	79069	79186	0.00	+	2	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	intron	79187	79613	0.00	+	.	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	cds	79614	79713	0.00	+	1	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	intron	79714	81256	0.00	+	.	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
GL397342.1:subseq(5664893,131448)	GeneWise	cds	81257	81448	0.00	+	0	GL397342.1:subseq(5664893,131448)-genewise-prediction-1
//