genewise output
Score 133.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000004_1.0   58 QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSL           
                     ++N LQ  L P GLV+LGFPCNQFG QE  +N EIL +L           
                     ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL           
GL397305.1:subs50000 gcagccggcgctgcgacgtctactgacgcggatgaccac           
                     atactaaatcctgttttgtcgaatgaaacgaacattcct           
                     agtaagagtaattgctgctcccgtaagaaagcagctccc           


SPP00000004_1.0   97                           YVRPGGGFEPNFMLFEKCEVNGA 
                                               YVRPGGGF PNF+LFEK +VNG  
                                K:K[aag]       YVRPGGGFVPNFQLFEKGDVNGE 
GL397305.1:subs50117 AAGTGAGTG  Intron 1   CAGGtgccgggtgcatcctgagggagg 
                       <2-----[50119:50533]-2> atgcgggttcatattaagataga 
                                               tcaatactcttcgctgagtctag 


SPP00000004_1.0  121 GAHPLFAFLR                       EALPAPSDDATALMTD 
                          + FL+                        + P  S+    L T  
                     KEQKFYTFLK                       NSCPPTSE---LLGTS 
GL397305.1:subs50604 agcattatcaGTGAGTG  Intron 2   TAGattccatg   ccgat 
                     aaaatactta<0-----[50634:51019]-0>acgcccca   ttgcc 
                     aggacctcag                       ccttccgg   cgtat 


SPP00000004_1.0  147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI    
                      +L+ W P+  +D+ WNFEKFLVGPDG P+ R+  R    +++ DI    
                     DRLF-WEPMKVHDIRWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDI    
GL397305.1:subs51059 gcct tgcaagcgactatgatcggcggacaactcccaagaagaaga    
                     agtt gactataatggataatttgcagccttggaagcctgatatat    
                     cccc gacggtccccgctggcgggattaccgcgccgcgccccggcc    


//
Making a K in phase 2 intron
>GL397305.1:subseq(18712755,101193).pep
ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDV
NGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHH
RTTVSNVKMDI
//
>GL397305.1:subseq(18712755,101193).[50000:51193].sp
GAACTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCATTCTGGGCTTTCCC
TGCAACCAGTTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCCTTCCCACCCTCAAG
TATGTCCGACCAGGTGGAGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTC
AATGGAGAGAAAGAGCAGAAATTCTACACTTTCCTAAAGAACTCCTGTCCTCCCACCTCG
GAGCTCCTGGGTACATCTGACCGCCTCTTCTGGGAACCCATGAAGGTTCACGACATCCGC
TGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTACACCCATCATGCGCTGGCACCAC
CGGACCACGGTCAGCAACGTCAAGATGGACATC
//
GL397305.1:subseq(18712755,101193)	GeneWise	match	50000	51193	135.00	+	.	GL397305.1:subseq(18712755,101193)-genewise-prediction-1
GL397305.1:subseq(18712755,101193)	GeneWise	cds	50000	50118	0.00	+	0	GL397305.1:subseq(18712755,101193)-genewise-prediction-1
GL397305.1:subseq(18712755,101193)	GeneWise	intron	50119	50533	0.00	+	.	GL397305.1:subseq(18712755,101193)-genewise-prediction-1
GL397305.1:subseq(18712755,101193)	GeneWise	cds	50534	50633	0.00	+	1	GL397305.1:subseq(18712755,101193)-genewise-prediction-1
GL397305.1:subseq(18712755,101193)	GeneWise	intron	50634	51019	0.00	+	.	GL397305.1:subseq(18712755,101193)-genewise-prediction-1
GL397305.1:subseq(18712755,101193)	GeneWise	cds	51020	51193	0.00	+	0	GL397305.1:subseq(18712755,101193)-genewise-prediction-1
//