Command line: [exonerate -m p2g --showtargetgff -q SPP00000004_1.0.fa -t SPP00000004_1.0.GL397305.1/GL397305.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: GL397305.1:subseq(18712755,101193) dna:supercontig supercontig:Nleu1.0:GL397305.1:1:19291937:1 REF
         Model: protein2genome:local
     Raw score: 319
   Query range: 57 -> 192
  Target range: 49999 -> 51193

    58 : GlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPhePro :    77
         :!!:!!|||! !||||||..!..!|||!.!|||  !|||||||||:!!||||||||||||
         GluLeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIleLeuGlyPhePro
 50000 : GAACTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCATTCTGGGCTTTCCC : 50057

    78 : CysAsnGlnPheGlyHisGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeu{Ly :    97
         ||||||||||||||| ! ||||||   !.!:!!|||..!|||||||||  !!!!|||{||
         CysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuProThrLeu{Ly
 50058 : TGCAACCAGTTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCCTTCCCACCCTC{AA : 50117

    98 : }  >>>> Target Intron 1 >>>>  {s}TyrValArgProGlyGlyGlyPheGlu :   106
         }            415 bp           {|}||||||||||||||||||||||||!  
         }++                         ++{s}TyrValArgProGlyGlyGlyPheVal
 50118 : }gt.........................ag{G}TATGTCCGACCAGGTGGAGGCTTTGTC : 50559

   107 : ProAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPhe :   126
         |||||||||..!|||||||||||| ! !!:|||||||||! !  !! !!!.  !!!!!:!
         ProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysPheTyr
 50560 : CCTAATTTCCAGCTCTTTGAGAAAGGGGATGTCAATGGAGAGAAAGAGCAGAAATTCTAC : 50619

   127 : AlaPheLeuArg  >>>> Target Intron 2 >>>>  GluAlaLeuProAlaProS :   137
         .!!||||||!:!            374 bp           ...  !|||  !  ! !!!
         ThrPheLeuLys++                         --SerLeuLeu***AsnSerC
 50620 : ACTTTCCTAAAGgt.........................caTCCCTGCTCTAGAACTCCT : 51026

   138 : erAspAspAlaThrAlaLeuMetThrAspProLysLeuIleThrTrpSerProValCysA :   157
         !!  !  !.!!:!!! !|||:!!  !    !! ! ! !:!!  !|||..!|||:!!    
         ysProProThrSerGluLeuLeuGlyThrSerAspArgLeuPheTrpGluProMetLysV
 51027 : GTCCTCCCACCTCGGAGCTCCTGGGTACATCTGACCGCCTCTTCTGGGAACCCATGAAGG : 51086

   158 : rgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuA :   177
          !:!!|||:!!  !||||||||||||||||||||||||||||||||||||..!|||:!!!
         alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyThrProIleM
 51087 : TTCACGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTACACCCATCA : 51146

   178 : rgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIle :   192
          !|||!::  !!.!|||  !  !..!! !:!!:!!:!!  !||||||
         etArgTrpHisHisArgThrThrValSerAsnValLysMetAspIle
 51147 : TGCGCTGGCACCACCGGACCACGGTCAGCAACGTCAAGATGGACATC : 51193

vulgar: SPP00000004_1.0 57 192 . GL397305.1:subseq(18712755,101193) 49999 51193 + 319 M 39 117 S 0 2 5 0 2 I 0 411 3 0 2 S 1 1 M 33 99 5 0 2 I 0 370 3 0 2 M 62 186
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	gene	50000	51193	319	+	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation +
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	cds	50000	50118	.	+	.	
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	exon	50000	50118	.	+	.	insertions 0 ; deletions 0
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	splice5	50119	50120	.	+	.	intron_id 1 ; splice_site "GT"
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	intron	50119	50533	.	+	.	intron_id 1
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	splice3	50532	50533	.	+	.	intron_id 0 ; splice_site "AG"
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	cds	50534	50633	.	+	.	
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	exon	50534	50633	.	+	.	insertions 0 ; deletions 0
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	splice5	50634	50635	.	+	.	intron_id 2 ; splice_site "GT"
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	intron	50634	51007	.	+	.	intron_id 2
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	splice3	51006	51007	.	+	.	intron_id 1 ; splice_site "CA"
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	cds	51008	51193	.	+	.	
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	exon	51008	51193	.	+	.	insertions 0 ; deletions 0
GL397305.1:subseq(18712755,101193)	exonerate:protein2genome:local	similarity	50000	51193	319	+	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 50000 58 117 ; Align 50535 98 99 ; Align 51008 131 186
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis