Command line: [exonerate -m p2g --showtargetgff -q SPP00000004_1.0.fa -t SPP00000004_1.0.GL397269.1/GL397269.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: GL397269.1:subseq(37559082,100786) dna:supercontig supercontig:Nleu1.0:GL397269.1:1:47109586:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 945
   Query range: 0 -> 203
  Target range: 50875 -> 49999

     1 : MetCysAlaAlaArgLeuAlaAlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSer :    20
         ||||||||||||||||||      |||||||||! !||||||||||||!! |||||||||
         MetCysAlaAlaArgLeu------AlaAlaAlaAspAlaGlnSerVal***AlaPheSer
 50875 : ATGTGTGCTGCTCGGCTA------GCGGCGGCGGATGCCCAGTCGGTGTAAGCCTTTTCC : 50824

    21 : AlaArgProLeuAlaGlyGlyGluProValSerLeuGly--SerLeuArgGlyLysValL :    40
         |||||||||||||||||||||||||||||||||||||||##   ||||||||||||:!!|
         AlaArgProLeuAlaGlyGlyGluProValSerLeuGly##---LeuArgGlyLysIleL
 50823 : GCGCGCCCGCTGGCCGGCGGGGAGCCTGTGAGCCTGGGCTC---CTGCGGGGCAAGATAC : 50765

    41 : euLeuIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspTyrThrGlnMetA :    60
         ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
         euLeuIleGluAsnValAlaSerLeu***GlyThrThrValArgAspTyrThrGlnMetA
 50764 : TACTTATCGAGAATGTGGCGTCCCTCTGAGGCACCACGGTCCGGGACTACACCCAGATGA : 50705

    61 : snGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnG :    80
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         snGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnG
 50704 : ACGAGCTGCAGCGGCGCCTCGGGCCCCGGGGCCTGGTGGTGCTCGGCTTCCCGTGCAACC : 50645

    81 : lnPheGlyHisGln  >>>> Target Intron 1 >>>>  GluAsnAlaLysAsnGl :    90
         ||||||||||||||            274 bp           |||||||||||||||||
         lnPheGlyHisGln++                         ++GluAsnAlaLysAsnGl
 50644 : AGTTTGGGCATCAGgt.........................agGAGAACGCCAAGAACGA : 50341

    91 : uGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheMe :   110
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         uGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheMe
 50340 : AGAGATTCTGAATTCCCTCAAGTACGTCCGACCTGGTGGTGGGTTCGAGCCCAACTTCAT : 50281

   111 : tLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuAr :   130
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         tLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuAr
 50280 : GCTCTTCGAGAAGTGCGAGGTGAACGGTGCGGGGGCGCACCCTCTCTTCGCCTTCCTGCG : 50221

   131 : gGluAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspProLysLeuIl :   150
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         gGluAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspProLysLeuIl
 50220 : GGAGGCCCTGCCAGCCCCCAGCGACGACGCCACTGCACTTATGACCGACCCCAAGCTCAT : 50161

   151 : eThrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysPheLeuValGl :   170
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         eThrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysPheLeuValGl
 50160 : CACCTGGTCTCCGGTGTGTCGCAACGATGTTGCCTGGAACTTTGAGAAGTTCCTGGTGGG : 50101

   171 : yProAspGlyValProLeuArgArgTyrSerArgArgPheGlnThrIleAspIleGluPr :   190
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         yProAspGlyValProLeuArgArgTyrSerArgArgPheGlnThrIleAspIleGluPr
 50100 : CCCTGACGGTGTGCCCCTACGCAGGTACAGCCGCCGCTTCCAGACCATTGACATCGAGCC : 50041

   191 : oAspIleGluAlaLeuLeuSerGlnGlyProSerCysAla :   203
         ||||||||||||||||||||||||||||||||||||||||
         oAspIleGluAlaLeuLeuSerGlnGlyProSerCysAla
 50040 : TGACATCGAAGCCCTGCTCTCTCAAGGGCCCAGCTGTGCC : 50000

vulgar: SPP00000004_1.0 0 203 . GL397269.1:subseq(37559082,100786) 50875 49999 - 945 M 6 18 G 2 0 M 25 75 F 0 2 G 1 0 M 50 150 5 0 2 I 0 270 3 0 2 M 119 357
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	gene	50000	50875	945	-	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation +
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	cds	50631	50875	.	-	.	
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	exon	50631	50875	.	-	.	insertions 0 ; deletions 3 ; frameshifts 2
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	splice5	50629	50630	.	-	.	intron_id 1 ; splice_site "GT"
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	intron	50357	50630	.	-	.	intron_id 1
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	splice3	50357	50358	.	-	.	intron_id 0 ; splice_site "AG"
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	cds	50000	50356	.	-	.	
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	exon	50000	50356	.	-	.	insertions 0 ; deletions 0
GL397269.1:subseq(37559082,100786)	exonerate:protein2genome:local	similarity	50000	50875	945	-	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 50876 1 18 ; Align 50858 9 75 ; Align 50781 35 150 ; Align 50357 85 357
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis