Command line: [exonerate -m p2g --showtargetgff -q SPP00000003_1.0.fa -t SPP00000003_1.0.GL397280.1/GL397280.1.subseq]
Hostname: [upf-OptiPlex-755]

C4 Alignment:
------------
         Query: SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete
        Target: GL397280.1:subseq(17421119,100569) dna:supercontig supercontig:Nleu1.0:GL397280.1:1:32585412:1 REF:[revcomp]
         Model: protein2genome:local
     Raw score: 305
   Query range: 123 -> 265
  Target range: 50443 -> 49999

   124 : HisIleLeuAspTyrAlaGlnGlyAsnArgProLeuValLeuAsnPheGlySerCysThr :   143
         |||:!!||||||!:!|||...  !.!.||||||||||||:!!||||||||||||..!|||
         HisLeuLeuAspPheAlaSerProGluArgProLeuValValAsnPheGlySerAlaThr
 50443 : CACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTAGTGGTCAACTTTGGCTCAGCCACT : 50386

   144 : UnkProProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLysTyrGlnArg :   163
            |||||||||! !::!!:!:!! !!||||||!::|||||||||  !:!!!:!...  !
         ***ProProPheThrSerGlnLeuProAlaPheArgArgLeuValGluGluPheSerSer
 50385 : TGACCTCCTTTCACGAGCCAGCTGCCAGCCTTCCGCAGACTGGTGGAAGAGTTCTCCTCG : 50326

   164 : AspValAspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGlyTrp<->Val :   182
         !  !.!|||||||||:!::!!||||||!!:||||||||||||||||||||||||   :!!
         ValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpAlaIle
 50325 : GTGGCTGACTTCCTGCTGGTCTACATTGATGAGGCTCATCCATCAGATGGCTGGGCGATA : 50266

   183 : ThrThrAspSer<-><->ProTyrIleIleProGlnHisArgSerLeuGluAspArgVal :   200
          !!  !||||||       !!!:!   :!:  !:!!|||!:!!:!! !|||||||||  !
         ProGlyAspSerSerLeuSerPheGluValLysLysHisGlnAsnGlnGluAspArgCys
 50265 : CCTGGGGACTCCTCTTTGTCTTTTGAGGTGAAGAAGCACCAGAACCAGGAAGATCGATGT : 50206

   201 : SerAlaAlaArgValLeuGlnGlnGly<-><-><->AlaProGlyCysAlaLeuValLeu :   217
         :!!||||||!:!  !|||! !:!! !!          !!|||  !|||  !:!!|||  !
         AlaAlaAlaGlnGlnLeuLeuGluArgPheSerLeuProProGlnCysArgValValAla
 50205 : GCAGCAGCCCAGCAGCTTCTGGAGCGTTTCTCCTTGCCGCCCCAGTGCCGAGTTGTGGCT : 50146

   218 : AspThrMetAlaAsnSerSerSerSerAlaTyrGlyAlaTyrPheGluArgLeuTyrVal :   237
         |||  !|||! !|||!:!:!!!:!! !|||||||||!.!  !|||||||||:!!! !:!!
         AspArgMetAspAsnAsnAlaAsnIleAlaTyrGlyValAlaPheGluArgValCysIle
 50145 : GACCGCATGGACAATAACGCCAACATAGCTTACGGGGTAGCCTTTGAACGTGTGTGCATT : 50086

   238 : IleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProAspGlyTyrGlnValSer :   257
         :!:|||!!!  !! !|||   |||! !||||||!:!||||||  !..!|||.!.:!!..!
         ValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPheSerTyrAsnLeuGln
 50085 : GTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGGCCCCTTCTCCTACAACCTTCAA : 50026

   258 : GluLeuArgThrTrpLeuGluArg :   265
         |||:!!|||  !|||||||||!:!
         GluValArgHisTrpLeuGluLys
 50025 : GAAGTCCGGCATTGGCTGGAGAAG : 50000

vulgar: SPP00000003_1.0 123 265 . GL397280.1:subseq(17421119,100569) 50443 49999 - 305 M 58 174 G 0 3 M 5 15 G 0 6 M 23 69 G 0 9 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL397280.1:subseq(17421119,100569)	exonerate:protein2genome:local	gene	50000	50443	305	-	.	gene_id 1 ; sequence SPP00000003_1.0 ; gene_orientation .
GL397280.1:subseq(17421119,100569)	exonerate:protein2genome:local	cds	50000	50443	.	-	.	
GL397280.1:subseq(17421119,100569)	exonerate:protein2genome:local	exon	50000	50443	.	-	.	insertions 18 ; deletions 0
GL397280.1:subseq(17421119,100569)	exonerate:protein2genome:local	similarity	50000	50443	305	-	.	alignment_id 1 ; Query SPP00000003_1.0 ; Align 50444 124 174 ; Align 50267 182 15 ; Align 50246 187 69 ; Align 50168 210 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis