TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000080_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Mus
musculus # Complete
         (496 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418159.1| Mustela putorius furo unplaced genomic scaffold s...   100   1e-19
gb|JH417981.1| Mustela putorius furo unplaced genomic scaffold s...    96   3e-18
gb|JH418002.1| Mustela putorius furo unplaced genomic scaffold s...    91   2e-16
gb|JH418206.1| Mustela putorius furo unplaced genomic scaffold s...    50   3e-04
gb|JH418144.1| Mustela putorius furo unplaced genomic scaffold s...    36   4.1  

>gb|JH418159.1| Mustela putorius furo unplaced genomic scaffold scaffold00187, whole
              genome shotgun sequence
          Length = 3806694

 Score =  100 bits (250), Expect = 1e-19
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2

Query: 261    QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIG 320
              QQMSSLVTE+M S GT+FL+GC PS +++LP  QLQVTWED +SGKEDTGTF+TVLWAIG
Sbjct: 632714 QQMSSLVTEYMASQGTRFLRGCTPSRVQRLPDGQLQVTWEDPSSGKEDTGTFNTVLWAIG 632893

Query: 321    R 321
              +
Sbjct: 632894 K 632896



 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 46/69 (66%), Positives = 51/69 (73%)
 Frame = +2

Query: 80     GTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHV 139
              GT+WGLGGTCVNVGCIPKKLMHQAALLGGM++DA HYGW + QPV H+W          V
Sbjct: 613520 GTRWGLGGTCVNVGCIPKKLMHQAALLGGMVQDAPHYGWAL-QPVPHDW*GALPIPLTSV 613696

Query: 140    KSLNWGHRV 148
                L WG RV
Sbjct: 613697 -LLGWGKRV 613720



 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 6/75 (8%)
 Frame = +3

Query: 300    EDHASGKEDT-----GTFDT-VLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATS 353
              E H+  +E++       F+   L+  GR+PETR+LNLEKAG+ T+P +QKI+VDA E TS
Sbjct: 642126 EKHSDSREESQWELLNVFEPCTLFPSGRIPETRSLNLEKAGVHTSPTSQKILVDALETTS 642305

Query: 354    VPHIYAIGDVAEGRP 368
              VPHIYAIGDVAE RP
Sbjct: 642306 VPHIYAIGDVAEVRP 642350



 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 36/43 (83%), Positives = 40/43 (93%)
 Frame = +3

Query: 454    KCGASYAQVMQTVGIHPTCSEEVVKLHISKRSGLEPTVTGCUG 496
              +CGASYAQVM+TVGIHPTC+EEV KL ISKRSGL+PTVTGC G
Sbjct: 649578 RCGASYAQVMRTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G 649706



 Score = 72.0 bits (175), Expect = 7e-11
 Identities = 32/37 (86%), Positives = 35/37 (94%)
 Frame = +2

Query: 418    CYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIK 454
              C  +MVC+R+PPQLVLGLHFLGPNAGEVTQGFALGIK
Sbjct: 647747 CGFQMVCLRKPPQLVLGLHFLGPNAGEVTQGFALGIK 647857



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +2

Query: 231    DVALECAGFLTGIGLDTTVMMRSIPLRGFDQ 261
              DVALECAGFLTG+GLDTTVM+RSIPLRGFDQ
Sbjct: 629807 DVALECAGFLTGLGLDTTVMIRSIPLRGFDQ 629899



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 365    EGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNV 398
              +GRPELTPTAI AGKLLAQRL G+SS +MDY NV
Sbjct: 645489 QGRPELTPTAIMAGKLLAQRLCGQSSDVMDYENV 645590



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +1

Query: 398    VYHAYYKPLEFTVADRDASQCYIKM 422
              VYHAYYKPLEFTVA+RDASQCYIK+
Sbjct: 647521 VYHAYYKPLEFTVAERDASQCYIKV 647595



 Score = 53.9 bits (128), Expect = 2e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 130    TMAEAVQNHVKSLNWGHRVQLQDR 153
              TMAEAVQNHVKSLNWGHRVQLQDR
Sbjct: 614706 TMAEAVQNHVKSLNWGHRVQLQDR 614777



 Score = 53.1 bits (126), Expect = 3e-05
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 197    YPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVAL 234
              +P  ++GALEYGITSDD+FWLKESPGKT  P    +A+
Sbjct: 620622 FPG*IEGALEYGITSDDLFWLKESPGKT*DPMCALMAI 620735



 Score = 47.0 bits (110), Expect = 0.002
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = +1

Query: 153    RKVKYFNIKASFVDEHTVRGVDKGGK 178
              RKV YFNIKASFVD HTV GV KGGK
Sbjct: 616486 RKVTYFNIKASFVDAHTVCGVSKGGK 616563



 Score = 45.4 bits (106), Expect = 0.007
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +1

Query: 180    TLLSAEHIVIATGGRPRYPTQV 201
              TLLSAEHI+IATGGRPRYPT V
Sbjct: 617056 TLLSAEHIIIATGGRPRYPTHV 617121



 Score = 42.4 bits (98), Expect = 0.057
 Identities = 21/29 (72%), Positives = 21/29 (72%)
 Frame = +2

Query: 61     AAQLGKKVAVADYVEPSPRGTKWGLGGTC 89
              AAQLGKKVAV DYVEPSPRG     G  C
Sbjct: 613199 AAQLGKKVAVVDYVEPSPRGR*PRKGAVC 613285



 Score = 41.6 bits (96), Expect = 0.097
 Identities = 18/20 (90%), Positives = 20/20 (100%)
 Frame = +1

Query: 41     QSFDLLVIGGGSGGLACAKE 60
              Q++DLLVIGGGSGGLACAKE
Sbjct: 605506 QNYDLLVIGGGSGGLACAKE 605565


>gb|JH417981.1| Mustela putorius furo unplaced genomic scaffold scaffold00009, whole genome
                shotgun sequence
          Length = 25604138

 Score = 96.3 bits (238), Expect = 3e-18
 Identities = 48/74 (64%), Positives = 55/74 (74%)
 Frame = -1

Query: 211      SDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEH 270
                SDD+F L   PGKT V  A  VALECAGFL GIGLD TVM+RSI LRGFDQ M++ + EH
Sbjct: 10285262 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 10285083

Query: 271      MESHGTQFLKGCVP 284
                ME HG +F+K  VP
Sbjct: 10285082 MEEHGVKFIKQFVP 10285041



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -2

Query: 84       GLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQ 122
                GLGGTCVNVGCIPKKLMHQAALLG  ++D+  YGW   +
Sbjct: 10293136 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRTYGWNTEE 10293020



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = -3

Query: 432      VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 474
                V+G H LGPNAGEVTQGFA  +KCG +  Q+  T+GIHP C+E
Sbjct: 10265721 VVGFHILGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 10265593



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 31/48 (64%), Positives = 39/48 (81%)
 Frame = -2

Query: 343      KIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSS 390
                KI V  +E T+VP+IYAIGD+ EG+ ELTP AI+AG+LLAQRL+  SS
Sbjct: 10277638 KIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYAGSS 10277495



 Score = 62.4 bits (150), Expect = 5e-08
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
 Frame = -3

Query: 124      VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGV-----DKGGK 178
                V+H+W  M EAVQNH+ SLNWG+RV L+++KV Y N    FV  H ++ +      +GGK
Sbjct: 10288032 VKHDWNKMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKVIV**VGGRGGK 10287853

Query: 179      ATLL 182
                  ++
Sbjct: 10287852 EKVI 10287841



 Score = 42.7 bits (99), Expect = 0.044
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = -3

Query: 396      SNVYHAYYKPLEFTVADRDASQCYIKMVC 424
                S VYH+Y+ PLE+T+  RD ++CY K++C
Sbjct: 10269318 SQVYHSYFWPLEWTIPSRDNNKCYAKVIC 10269232



 Score = 37.4 bits (85), Expect = 1.8
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -3

Query: 60       EAAQLGKKVAVADYVEPSPRGTKWG 84
                EAA+  KKV V D+V P+P GT+WG
Sbjct: 10295442 EAAKYDKKVMVLDFVTPTPHGTRWG 10295368


>gb|JH418002.1| Mustela putorius furo unplaced genomic scaffold scaffold00030, whole genome
                shotgun sequence
          Length = 15585784

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 45/74 (60%), Positives = 53/74 (71%)
 Frame = +2

Query: 211      SDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEH 270
                SDD+F L   PGKT V  A  VALEC GFL GIGLD T+M+RSI LRGFDQ+M+  V  +
Sbjct: 15165770 SDDLFSLPYCPGKTLVVGASYVALECGGFLAGIGLDVTIMVRSILLRGFDQEMAEKVGSY 15165949

Query: 271      MESHGTQFLKGCVP 284
                ME HG +FL+  VP
Sbjct: 15165950 MEQHGVKFLRKFVP 15165991



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +3

Query: 84       GLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWE 119
                GLGGTCVNVGC+PKKLMHQAALLG  ++DA  +GWE
Sbjct: 15155952 GLGGTCVNVGCVPKKLMHQAALLGQELKDARKFGWE 15156059



 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +2

Query: 432      VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 474
                V+G H LGPNAGE+TQGFA  +KCG +  Q+  T+GIHPTC E
Sbjct: 15200384 VIGFHVLGPNAGEITQGFAAAMKCGLTKQQLDDTIGIHPTCGE 15200512



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = +2

Query: 124      VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVR 171
                V+HNW+TM EA+QNH+ SLNWG+R+ L+++ V Y N    FV+ H ++
Sbjct: 15162635 VKHNWETMIEAIQNHIGSLNWGYRLSLREKAVTYVNSYGEFVEHHKIK 15162778



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = +2

Query: 340      KNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 389
                ++ KI V+  E T+VP++YA+GD+ EG+ ELTP AI+AGKLLA+RLF  S
Sbjct: 15173294 RSGKIPVNDVEQTNVPYVYAVGDILEGKLELTPIAIQAGKLLARRLFAGS 15173443



 Score = 40.4 bits (93), Expect = 0.22
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +1

Query: 398      VYHAYYKPLEFTVADRDASQCYIKMVC 424
                VYH ++ PLE+TVA RD + CY K++C
Sbjct: 15198628 VYHTFFWPLEWTVAGRDNNTCYAKIIC 15198708



 Score = 39.7 bits (91), Expect = 0.37
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 60       EAAQLGKKVAVADYVEPSPRGTKWG 84
                EAA LGKKV V D+V P+P+GT WG
Sbjct: 15154190 EAAILGKKVMVLDFVVPTPQGTSWG 15154264



 Score = 35.0 bits (79), Expect = 9.1
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +3

Query: 43       FDLLVIGGGSGGLACAK 59
                +DL+VIGGGSGGLACA+
Sbjct: 15153933 YDLIVIGGGSGGLACAQ 15153983


>gb|JH418206.1| Mustela putorius furo unplaced genomic scaffold scaffold00234, whole
             genome shotgun sequence
          Length = 2855657

 Score = 50.1 bits (118), Expect = 3e-04
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +1

Query: 432   VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKL 479
             V+G+H  G    E+ QGFA+ +K GA+ A    TV IHPT SEE+V L
Sbjct: 61243 VVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 61386



 Score = 48.1 bits (113), Expect = 0.001
 Identities = 26/50 (52%), Positives = 32/50 (64%)
 Frame = +2

Query: 42    SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN 91
             S+D LVIGGGSGGLA A+ AA+LG + AV +            LGGTCV+
Sbjct: 14339 SYDYLVIGGGSGGLASARRAAELGARAAVVE---------SHKLGGTCVS 14461


>gb|JH418144.1| Mustela putorius furo unplaced genomic scaffold scaffold00172, whole genome
               shotgun sequence
          Length = 4257585

 Score = 36.2 bits (82), Expect = 4.1
 Identities = 22/45 (48%), Positives = 25/45 (55%)
 Frame = +3

Query: 51      GSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCI 95
               G GG A A    QLGK+   A YV P+ RG   GLG   V VGC+
Sbjct: 1095093 GLGGFAAAG-GVQLGKRAPGAPYVTPNSRGCTEGLG--VVGVGCV 1095218


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.318    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,357,111,526
Number of Sequences: 4245
Number of extensions: 21469576
Number of successful extensions: 83735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 73200
Number of HSP's gapped (non-prelim): 31220
length of query: 496
length of database: 800,060,566
effective HSP length: 135
effective length of query: 361
effective length of database: 799,487,491
effective search space: 288614984251
effective search space used: 288614984251
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)
