TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000118_1.0 # Protein # Selenoprotein W2 (SelW2) # Mus
musculus # Complete
         (115 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418027.1| Mustela putorius furo unplaced genomic scaffold s...    68   2e-18
gb|JH418502.1| Mustela putorius furo unplaced genomic scaffold s...    35   0.82 
gb|JH418016.1| Mustela putorius furo unplaced genomic scaffold s...    35   0.82 
gb|JH418046.1| Mustela putorius furo unplaced genomic scaffold s...    32   4.1  
gb|JH418047.1| Mustela putorius furo unplaced genomic scaffold s...    32   5.3  

>gb|JH418027.1| Mustela putorius furo unplaced genomic scaffold scaffold00055, whole genome
                shotgun sequence
          Length = 11660608

 Score = 68.2 bits (165), Expect = 7e-11
 Identities = 31/33 (93%), Positives = 33/33 (100%)
 Frame = -2

Query: 31       KPCGFEATYLELASAVKEEYPGIEIESRLGGTG 63
                +PCGFEATYLELASAVKE+YPGIEIESRLGGTG
Sbjct: 10515651 EPCGFEATYLELASAVKEQYPGIEIESRLGGTG 10515553



 Score = 58.9 bits (141), Expect(2) = 2e-18
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = -3

Query: 51       PGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDL 89
                P + I+  L   GAFEIEINGQLVFSKLENGGFPYEKD+
Sbjct: 10515152 PVVSIQFILLIPGAFEIEINGQLVFSKLENGGFPYEKDV 10515036



 Score = 54.7 bits (130), Expect(2) = 2e-18
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = -1

Query: 89       LMEAIRRASNGEPVEKITNSRPPCVIL 115
                L+EAIRRASNGEP+EKITNSRPPCVIL
Sbjct: 10514959 LIEAIRRASNGEPLEKITNSRPPCVIL 10514879


>gb|JH418502.1| Mustela putorius furo unplaced genomic scaffold scaffold00530, whole
              genome shotgun sequence
          Length = 198950

 Score = 34.7 bits (78), Expect = 0.82
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 55     IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLMEAI 93
              IE++   TGAFEI +N   V+SKLE+G  P  + L++ +
Sbjct: 198748 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 198864


>gb|JH418016.1| Mustela putorius furo unplaced genomic scaffold scaffold00044, whole genome
               shotgun sequence
          Length = 12894818

 Score = 34.7 bits (78), Expect = 0.82
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -2

Query: 55      IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLMEAI 93
               IE++   TGAFEI +N   V+SKLE+G  P  + L++ +
Sbjct: 4890016 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 4889900


>gb|JH418046.1| Mustela putorius furo unplaced genomic scaffold scaffold00074, whole genome
               shotgun sequence
          Length = 9367240

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 35      FEATYLELASAVKEEYPGIEI--ESRLGGTGAFEIEINGQLVFSKLENG 81
               FE +Y+   S   + YP ++    S +GGTG  ++ +   L F K ENG
Sbjct: 2669082 FELSYIGSYSLYPQLYPSLQKCPLSEVGGTGGIQVNLKKSLTFLK*ENG 2669228


>gb|JH418047.1| Mustela putorius furo unplaced genomic scaffold scaffold00075, whole genome
               shotgun sequence
          Length = 9322345

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 67      IEINGQLVFSKLENGGFPYEKDLMEAIRRASNGEPVEKITNSRPPCVI 114
               I INGQL+F K++   F  +K         + G P  KI NS   C I
Sbjct: 6590075 IHINGQLIFMKIQR-QFSEDKTTFSTNDSGTTGYPCAKINNSSISCTI 6590215


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.317    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,702,669
Number of Sequences: 4245
Number of extensions: 2221553
Number of successful extensions: 6832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6539
Number of HSP's gapped (non-prelim): 829
length of query: 115
length of database: 800,060,566
effective HSP length: 90
effective length of query: 25
effective length of database: 799,678,516
effective search space: 19991962900
effective search space used: 19991962900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
